/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/components/ |
H A D | DisplayAdjustmentEvent_ESTest.java | 36 int int0 = displayAdjustmentEvent0.getWidthInBases(); in test01() local 49 int int0 = displayAdjustmentEvent0.getWidthInBases(); in test02() local 61 int int0 = displayAdjustmentEvent0.getType(); in test03() local 71 int int0 = displayAdjustmentEvent0.getType(); in test04() local 84 int int0 = displayAdjustmentEvent0.getStart(); in test05() local 95 int int0 = displayAdjustmentEvent0.getStart(); in test06() local 129 int int0 = displayAdjustmentEvent0.getEnd(); in test09() local 140 int int0 = displayAdjustmentEvent0.getEnd(); in test10() local 255 int int0 = displayAdjustmentEvent0.getType(); in test19() local 283 int int0 = displayAdjustmentEvent0.getEnd(); in test21() local [all …]
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H A D | AlignmentViewer_ESTest.java | 27 int int0 = AlignmentViewer.getRealQuerySequenceStart(alignMatch0, (-5438), true); in test00() local 35 int int0 = AlignmentViewer.getRealQuerySequenceStart(alignMatch0, (-2284), true); in test01() local 43 int int0 = AlignmentViewer.getRealQuerySequenceEnd(alignMatch0, 3, false); in test02() local 81 int int0 = AlignmentViewer.getRealQuerySequenceEnd(alignMatch0, 3000, true); in test05() local 89 int int0 = AlignmentViewer.getRealQuerySequenceEnd(alignMatch0, 3000, false); in test06() local 97 int int0 = AlignmentViewer.getRealQuerySequenceStart(alignMatch0, (-1153), true); in test07() local 120 int int0 = AlignmentViewer.getRealSubjectSequenceEnd(alignMatch0, 120000, true); in test09() local 128 int int0 = AlignmentViewer.getRealSubjectSequenceEnd(alignMatch0, 120018, false); in test10() local
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H A D | ProcessWatcherEvent_ESTest.java | 25 int int0 = processWatcherEvent0.getExitCode(); in test0() local 32 int int0 = processWatcherEvent0.getExitCode(); in test1() local 39 int int0 = processWatcherEvent0.getExitCode(); in test2() local
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H A D | ScoreChangeEvent_ESTest.java | 22 int int0 = scoreChangeEvent0.getValue(); in test0() local 29 int int0 = scoreChangeEvent0.getValue(); in test1() local 52 int int0 = scoreChangeEvent0.getValue(); in test3() local
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H A D | QualifierTextArea_ESTest.java | 25 int int0 = QualifierTextArea.getEndOfLink("*r8O'BdYI/", 2); in test0() local 70 int int0 = QualifierTextArea.getEndOfLink("rIa$T_:b|VJY6N)wx", (-943)); in test4() local 76 …int int0 = QualifierTextArea.getEndOfLink("the Allele Number (AN) tag is incorrect for the record … in test5() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/chado/ |
H A D | FeatureForUpdatingResidues_ESTest.java | 32 int int0 = featureForUpdatingResidues0.getStartBase(); in test01() local 40 int int0 = featureForUpdatingResidues0.getStartBase(); in test02() local 56 int int0 = featureForUpdatingResidues0.getLength(); in test04() local 64 int int0 = featureForUpdatingResidues0.getEndBase(); in test05() local 72 int int0 = featureForUpdatingResidues0.getBasesToEnd(); in test06() local 80 int int0 = featureForUpdatingResidues0.getBasesToEnd(); in test07() local 87 int int0 = featureForUpdatingResidues0.getStartBase(); in test08() local 96 int int0 = featureForUpdatingResidues0.getEndBase(); in test09() local 118 int int0 = featureForUpdatingResidues0.getEndBase(); in test12() local 127 int int0 = featureForUpdatingResidues0.getLength(); in test13() local [all …]
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H A D | Graph_ESTest.java | 38 int int0 = graph0.getGraphId(); in test02() local 46 int int0 = graph0.getFeatureId(); in test03() local 54 int int0 = graph0.getFeatureId(); in test04() local 95 int int0 = graph0.getGraphId(); in test09() local 102 int int0 = graph0.getFeatureId(); in test10() local 131 int int0 = graph0.getGraphId(); in test14() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/circular/digest/ |
H A D | CutSite_ESTest.java | 22 int int0 = cutSite0.getThreePrimeRev(); in test00() local 32 int int0 = cutSite0.getThreePrime(); in test01() local 41 int int0 = cutSite0.getFivePrimeRev(); in test02() local 77 int int0 = cutSite0.getFivePrime(); in test05() local 87 int int0 = cutSite0.getThreePrime(); in test06() local 98 int int0 = cutSite0.getThreePrimeRev(); in test07() local 118 int int0 = cutSite0.getFivePrimeRev(); in test09() local 158 int int0 = cutSite0.getFivePrime(); in test13() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/circular/ |
H A D | Feature_ESTest.java | 21 int int0 = feature0.getStart(); in test00() local 30 int int0 = feature0.getStart(); in test01() local 39 int int0 = feature0.getEnd(); in test02() local 48 int int0 = feature0.getEnd(); in test03() local 75 int int0 = feature0.getColour(); in test06() local 84 int int0 = feature0.getColour(); in test07() local 102 int int0 = feature0.getEnd(); in test09() local 111 int int0 = feature0.getStart(); in test10() local 120 int int0 = feature0.getColour(); in test11() local
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H A D | EmbossCirdnaReader_ESTest.java | 44 int int0 = embossCirdnaReader0.getStart(); in test01() local 53 int int0 = embossCirdnaReader0.getStart(); in test02() local 62 int int0 = embossCirdnaReader0.getEnd(); in test03() local 71 int int0 = embossCirdnaReader0.getEnd(); in test04() local 131 int int0 = embossCirdnaReader0.getStart(); in test09() local 155 int int0 = embossCirdnaReader0.getEnd(); in test12() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/sequence/ |
H A D | BasePattern_ESTest.java | 123 int int0 = BasePattern.patternType("k5Km%#+;#fc%zx@#"); in test08() local 129 int int0 = BasePattern.patternType("mG6h~"); in test09() local 135 int int0 = BasePattern.patternType("f*lS\"T>bE(UnMlK"); in test10() local 147 int int0 = BasePattern.patternType("s1?"); in test12() local 153 int int0 = BasePattern.patternType("o0_LP,fLk4oO7"); in test13() local 165 int int0 = BasePattern.patternType("rna"); in test15() local 177 int int0 = BasePattern.patternType("ixj2UGlP8G0d=Z`8"); in test17() local 183 int int0 = BasePattern.patternType("hr"); in test18() local 189 int int0 = BasePattern.patternType("g"); in test19() local 297 int int0 = BasePattern.patternType("enO}"); in test28() local [all …]
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H A D | AminoAcidSequence_ESTest.java | 73 int int0 = AminoAcidSequence.getAminoAcidType('('); in test000() local 156 int int0 = AminoAcidSequence.getSymbolIndex('#'); in test001() local 342 int int0 = AminoAcidSequence.getSymbolIndex('S'); in test003() local 513 int int0 = AminoAcidSequence.getAminoAcidType('8'); in test005() local 574 int int0 = AminoAcidSequence.getAminoAcidType('7'); in test006() local 929 int int0 = AminoAcidSequence.getSymbolIndex('V'); in test008() local 1167 int int0 = AminoAcidSequence.getSymbolIndex('X'); in test010() local 2779 int int0 = AminoAcidSequence.getSymbolIndex('U'); in test023() local 3110 int int0 = AminoAcidSequence.getSymbolIndex('M'); in test028() local 3387 int int0 = AminoAcidSequence.getSymbolIndex('A'); in test034() local [all …]
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H A D | SequenceChangeEvent_ESTest.java | 27 int int0 = sequenceChangeEvent0.getType(); in test00() local 37 int int0 = sequenceChangeEvent0.getType(); in test01() local 102 int int0 = sequenceChangeEvent0.getPosition(); in test08() local 111 int int0 = sequenceChangeEvent0.getPosition(); in test09() local 120 int int0 = sequenceChangeEvent0.getLength(); in test10() local 131 int int0 = sequenceChangeEvent0.getLength(); in test11() local 218 int int0 = sequenceChangeEvent0.getLength(); in test17() local 227 int int0 = sequenceChangeEvent0.getPosition(); in test18() local 265 int int0 = sequenceChangeEvent0.getType(); in test22() local
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H A D | MarkerRangeVector_ESTest.java | 26 int int0 = markerRangeVector0.size(); in test0() local 34 int int0 = markerRangeVector0.indexOf((MarkerRange) null); in test1() local 44 int int0 = markerRangeVector0.indexOf((MarkerRange) null); in test2() local 78 int int0 = markerRangeVector0.indexOf((MarkerRange) null); in test6() local 85 int int0 = markerRangeVector0.size(); in test7() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/io/ |
H A D | ReadFormatException_ESTest.java | 21 int int0 = readFormatException0.getLineNumber(); in test0() local 28 int int0 = readFormatException0.getLineNumber(); in test1() local 35 int int0 = readFormatException0.getLineNumber(); in test2() local
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H A D | QualifierInfo_ESTest.java | 53 int int0 = qualifierInfo0.getType(); in test03() local 62 int int0 = qualifierInfo0.getType(); in test04() local 142 int int0 = QualifierInfo.getQualifierTypeID("\"opt\""); in test11() local 148 int int0 = QualifierInfo.getQualifierTypeID("none"); in test12() local 154 int int0 = QualifierInfo.getQualifierTypeID("text"); in test13() local 160 int int0 = QualifierInfo.getQualifierTypeID("\"text\""); in test14() local 166 int int0 = QualifierInfo.getQualifierTypeID("EC"); in test15() local 247 int int0 = qualifierInfo0.getType(); in test23() local
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H A D | LowerInteger_ESTest.java | 22 int int0 = lowerInteger0.getPosition(); in test0() local 44 int int0 = lowerInteger0.getPosition(); in test2() local 52 int int0 = lowerInteger0.getPosition(); in test3() local
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H A D | UpperInteger_ESTest.java | 22 int int0 = upperInteger0.getPosition(); in test0() local 52 int int0 = upperInteger0.getPosition(); in test3() local 59 int int0 = upperInteger0.getPosition(); in test4() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/util/ |
H A D | InputStreamProgressEvent_ESTest.java | 21 int int0 = inputStreamProgressEvent0.getCharCount(); in test0() local 28 int int0 = inputStreamProgressEvent0.getCharCount(); in test1() local 35 int int0 = inputStreamProgressEvent0.getCharCount(); in test2() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/ |
H A D | SelectionChangeEvent_ESTest.java | 22 int int0 = selectionChangeEvent0.getType(); in test0() local 29 int int0 = selectionChangeEvent0.getType(); in test1() local 52 int int0 = selectionChangeEvent0.getType(); in test3() local
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H A D | ExternalProgramVector_ESTest.java | 24 int int0 = externalProgramVector0.size(); in test00() local 32 int int0 = externalProgramVector0.indexOf((ExternalProgram) null); in test01() local 92 int int0 = externalProgramVector0.indexOf(externalProgram0); in test08() local 119 int int0 = externalProgramVector0.indexOf(externalProgram1); in test10() local 126 int int0 = externalProgramVector0.size(); in test11() local
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H A D | AlignMatch_ESTest.java | 76 int int0 = alignMatch0.getSubjectSequenceStart(); in test05() local 108 int int0 = alignMatch0.getSubjectSequenceEnd(); in test08() local 128 int int0 = alignMatch0.getScore(); in test10() local 139 int int0 = alignMatch0.getScore(); in test11() local 204 int int0 = alignMatch0.getPercentID(); in test17() local 215 int int0 = alignMatch0.getPercentID(); in test18() local 226 int int0 = alignMatch0.getLength(); in test19() local 432 int int0 = alignMatch0.getQuerySequenceStart(); in test36() local 484 int int0 = alignMatch0.getPercentID(); in test41() local 494 int int0 = alignMatch0.getLength(); in test42() local [all …]
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H A D | ExternalProgramEvent_ESTest.java | 24 int int0 = externalProgramEvent0.getType(); in test0() local 31 int int0 = externalProgramEvent0.getType(); in test1() local 60 int int0 = externalProgramEvent0.getType(); in test5() local
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H A D | EntrySourceVector_ESTest.java | 31 int int0 = entrySourceVector0.size(); in test00() local 48 int int0 = entrySourceVector0.indexOf((EntrySource) null); in test02() local 59 int int0 = entrySourceVector0.indexOf(bioJavaEntrySource1); in test03() local 102 int int0 = entrySourceVector0.indexOf(bioJavaEntrySource0); in test08() local 148 int int0 = entrySourceVector0.size(); in test14() local
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/evosuite-tests/uk/ac/sanger/artemis/components/variant/ |
H A D | VariantBase_ESTest.java | 25 int int0 = variantBase0.getNumberOfIndels(false); in test00() local 49 int int0 = variantBase0.length(); in test03() local 58 int int0 = variantBase0.getNumberOfIndels(true); in test04() local 66 int int0 = variantBase0.getNumAlleles(); in test05() local 126 int int0 = variantBase0.getNumberOfIndels(false); in test10() local 151 int int0 = variantBase0.getNumberOfIndels(false); in test12() local 295 int int0 = variantBase0.length(); in test26() local 303 int int0 = variantBase0.getNumberOfIndels(false); in test27() local
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