| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/unit_test/ |
| H A D | blast_scope_src_unit_test.cpp | 308 bool is_prot, in s_RetrieveSequenceLength()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | blastclust.c | 976 Boolean print_progress, finish_incomplete, is_prot, parse_mode; in Main() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
| H A D | seqalignfilter.cpp | 502 CRef<CSeqDB> CSeqAlignFilter::PrepareSeqDB(const string& fname_db, bool is_prot, in PrepareSeqDB()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
| H A D | seqalignfilter.cpp | 501 CRef<CSeqDB> CSeqAlignFilter::PrepareSeqDB(const string& fname_db, bool is_prot, in PrepareSeqDB()
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| /dports/net-mgmt/ipaudit/ipaudit-1.1/src/ |
| H A D | ipstrings.c | 819 int is_prot; in parse_portstr() local
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| H A D | ipaudit.c | 1105 int is_prot; in parse_portstr() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | reference_item.cpp | 99 CCacheItem::CCacheItem(CBioseqContext& ctx, TCache csh, int length, bool is_prot) : in CCacheItem()
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| H A D | comment_item.cpp | 1020 bool is_prot = ctx.IsProt(); in GetStringForMolinfo() local
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| H A D | genbank_formatter.cpp | 1507 bool is_prot = false; in s_GetLinkFeatureKey() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | reference_item.cpp | 99 CCacheItem::CCacheItem(CBioseqContext& ctx, TCache csh, int length, bool is_prot) : in CCacheItem()
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| H A D | comment_item.cpp | 1020 bool is_prot = ctx.IsProt(); in GetStringForMolinfo() local
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| H A D | genbank_formatter.cpp | 1505 bool is_prot = false; in s_GetLinkFeatureKey() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/ |
| H A D | ftablock.h | 227 bool is_prot; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/asn2flat/ |
| H A D | asn2flat.cpp | 207 bool is_prot = false; in FormatLocation() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | blasthits_unit_test.cpp | 430 bool gapped, bool is_prot) in s_SetupScoringOptionsForReevaluateHSP()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | blasthits_unit_test.cpp | 430 bool gapped, bool is_prot) in s_SetupScoringOptionsForReevaluateHSP()
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| /dports/biology/ncbi-toolkit/ncbi/ddv/ |
| H A D | ddvopen.c | 2963 static void DDV_ImportSeqAlign(Boolean is_prot,IteM i) in DDV_ImportSeqAlign()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | salstruc.c | 2310 is_prot; in showfastagap_fromalign() local
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| H A D | alignmgr2.c | 8336 Boolean is_prot; in AlnMgr2ComputeScoreForSeqAlign() local
8588 static Int4 AlnMgr2GetScoreForPair(Int4 res1, Int4 res2, Boolean is_prot) in AlnMgr2GetScoreForPair()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_gapalign.c | 3423 Boolean is_prot; in BLAST_GetGappedScore() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_gapalign.c | 3442 Boolean is_prot; in BLAST_GetGappedScore() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_gapalign.c | 3442 Boolean is_prot; in BLAST_GetGappedScore() local
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | salfiles.c | 1951 extern SeqEntryPtr ReadAnyAlignment (Boolean is_prot, CharPtr path) in ReadAnyAlignment()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbvol.cpp | 1357 bool is_prot = (x_GetSeqType() == 'p'); in GetBioseq() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbvol.cpp | 1357 bool is_prot = (x_GetSeqType() == 'p'); in GetBioseq() local
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