| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | seqinfosrc_bioseq.cpp | 54 CBioseqSeqInfoSrc::CBioseqSeqInfoSrc(const objects::CBioseq& bs, bool is_prot) in CBioseqSeqInfoSrc()
59 bool is_prot) in CBioseqSeqInfoSrc()
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| H A D | bioseq_extract_data_priv.cpp | 231 (const objects::CBioseq_set& bss, bool is_prot) in CBlastQuerySourceBioseqSet()
243 (const objects::CBioseq& bioseq, bool is_prot) in CBlastQuerySourceBioseqSet()
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| H A D | local_db_adapter.cpp | 166 bool is_prot = Blast_SubjectIsProtein(p) ? true : false; in MakeSeqInfoSrc() local
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| H A D | objmgrfree_query_data.cpp | 96 bool is_prot = in CObjMgrFree_LocalQueryData() local
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| H A D | local_blast.cpp | 161 bool is_prot = BlastSeqSrcGetIsProt(seqsrc) ? true : false; in s_InitSeqInfoSrc() local
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| H A D | split_query_cxx.cpp | 477 static string s_GetPrintableSequence(const Uint1* seq, size_t len, bool is_prot) in s_GetPrintableSequence()
496 bool is_prot) in cmp_sequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | seqinfosrc_bioseq.cpp | 54 CBioseqSeqInfoSrc::CBioseqSeqInfoSrc(const objects::CBioseq& bs, bool is_prot) in CBioseqSeqInfoSrc()
59 bool is_prot) in CBioseqSeqInfoSrc()
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| H A D | bioseq_extract_data_priv.cpp | 231 (const objects::CBioseq_set& bss, bool is_prot) in CBlastQuerySourceBioseqSet()
243 (const objects::CBioseq& bioseq, bool is_prot) in CBlastQuerySourceBioseqSet()
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| H A D | local_db_adapter.cpp | 166 bool is_prot = Blast_SubjectIsProtein(p) ? true : false; in MakeSeqInfoSrc() local
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| H A D | objmgrfree_query_data.cpp | 96 bool is_prot = in CObjMgrFree_LocalQueryData() local
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| H A D | local_blast.cpp | 161 bool is_prot = BlastSeqSrcGetIsProt(seqsrc) ? true : false; in s_InitSeqInfoSrc() local
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| H A D | split_query_cxx.cpp | 477 static string s_GetPrintableSequence(const Uint1* seq, size_t len, bool is_prot) in s_GetPrintableSequence()
496 bool is_prot) in cmp_sequence()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_format/ |
| H A D | vecscreen_run_unit_test.cpp | 63 const bool is_prot = false; in BOOST_AUTO_TEST_CASE() local
88 const bool is_prot = false; in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_format/ |
| H A D | vecscreen_run_unit_test.cpp | 63 const bool is_prot = false; in BOOST_AUTO_TEST_CASE() local
88 const bool is_prot = false; in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/demo/ |
| H A D | blastinput_demo.cpp | 115 void PrintReport(CNcbiOstream& out, bool is_prot, CStopWatch& sw) const { in PrintReport()
144 bool is_prot = static_cast<bool>(args["mol_type"].AsString() == "prot"); in Run() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/struct_util/ |
| H A D | su_pssm.hpp | 50 bool is_prot; /* Matrix is for proteins */ member in BLAST_Matrix
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | fastacmd.c | 224 Uint1 is_prot; in Main() local
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | bandalgn.c | 747 NLM_EXTERN Int2 ChangeGlobalBandMatrix(GlobalBandStructPtr gbsp, Boolean is_prot, CharPtr matrix_na… in ChangeGlobalBandMatrix()
845 static Uint1Ptr load_data (SeqLocPtr slp,Boolean is_prot) in load_data()
868 …ctPtr CreatBandStruct(SeqLocPtr slp1, SeqLocPtr slp2, Int4Ptr PNTR W, Boolean is_prot, Int2 method) in CreatBandStruct()
934 NLM_EXTERN void SetLowUpFromBlast(PSUGapOptionsPtr opt, Boolean is_prot, Int2 type, Int2 width, Seq… in SetLowUpFromBlast()
1084 …BandByLoc(GlobalBandStructPtr gbsp, SeqLocPtr slp1, SeqLocPtr slp2, Boolean is_prot, Int2 band_me… in GlobalBandByLoc()
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| H A D | salign.c | 79 NLM_EXTERN MashPtr MashNew (Boolean is_prot) in MashNew()
152 Boolean is_prot; in CC_CreatBandStruct() local
173 Boolean is_prot; in BandAlignTwoSeqLocsFunc() local
529 static SeqAlignPtr BlastTwoSeqLocs (SeqLocPtr slp1, SeqLocPtr slp2, Boolean is_prot, MashPtr msp) in BlastTwoSeqLocs()
1440 …andAlignTwoSeqLocs (SeqLocPtr slp1, SeqLocPtr slp2, SeqAlignPtr salp, Boolean is_prot, MashPtr msp) in BlastBandAlignTwoSeqLocs()
1504 static SeqAlignPtr AlignAnyway (SeqLocPtr slp1, SeqLocPtr slp2, Boolean is_prot, MashPtr msp, Boole… in AlignAnyway()
1596 Boolean is_prot = FALSE; in SeqLocListToSeqAlign() local
1831 is_prot=FALSE; in BlastBandAlignFromBlastSeqAlign() local
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| H A D | salign.h | 28 Boolean is_prot; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/ |
| H A D | writedb.cpp | 280 bool is_prot, in s_ComputeNumSequencesAndDbLength()
361 bool is_prot(seq_type == CWriteDB::eProtein ? true : false); in s_CreateAliasFilePriv() local
419 bool is_prot(seq_type == CWriteDB::eProtein ? true : false); in CWriteDB_CreateAliasFile() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/ |
| H A D | writedb.cpp | 280 bool is_prot, in s_ComputeNumSequencesAndDbLength()
361 bool is_prot(seq_type == CWriteDB::eProtein ? true : false); in s_CreateAliasFilePriv() local
419 bool is_prot(seq_type == CWriteDB::eProtein ? true : false); in CWriteDB_CreateAliasFile() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
| H A D | best_placement.cpp | 139 const bool is_prot = isProtSS(aln); in GetScore() local
577 const bool is_prot = isProtSS(aln); in GetCoverage() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | locus_item.cpp | 449 bool is_prot, CMolInfo::TTech tech) in x_GetDivisionProcIdx()
611 static CTempString x_GetDivisionProc(const CBioseq_Handle& bsh, bool is_prot, in x_GetDivisionProc()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | locus_item.cpp | 449 bool is_prot, CMolInfo::TTech tech) in x_GetDivisionProcIdx()
611 static CTempString x_GetDivisionProc(const CBioseq_Handle& bsh, bool is_prot, in x_GetDivisionProc()
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