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Searched defs:journaledString (Results 1 – 5 of 5) sorted by relevance

/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence_journaled/
H A Dtest_sequence_journaled_iterator.h58 TJournaledString journaledString; in testJournaledStringIteratorDifference() local
70 TJournaledString journaledString; in testJournaledStringIteratorDifference() local
83 TJournaledString journaledString; in testJournaledStringIteratorDifference() local
96 TJournaledString journaledString; in testJournaledStringIteratorDifference() local
117 TJournaledString journaledString; in testJournaledStringIteratorSum() local
157 TJournaledString journaledString; in testJournaledStringIteratorRelations() local
H A Dtest_sequence_journaled.h192 String<char, Journaled<Alloc<void>, TStringJournalSpec> > journaledString; in testJournaledStringHost() local
235 TJournaledString journaledString; in testJournaledStringEmpty() local
240 TJournaledString journaledString; in testJournaledStringEmpty() local
246 TJournaledString journaledString; in testJournaledStringEmpty() local
252 TJournaledString journaledString; in testJournaledStringEmpty() local
1111 TJournaledString journaledString; in testJournaledStringSegmentsReadOnly() local