/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/journaled_set/ |
H A D | journal_alignment_interface.h | 69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
|
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/journaled_set/ |
H A D | journal_alignment_interface.h | 69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
|
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/journaled_set/ |
H A D | journal_alignment_interface.h | 69 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 99 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 115 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 140 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 160 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 193 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 212 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment() 241 …e globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journaledString, in globalAlignment()
|
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence_journaled/ |
H A D | test_sequence_journaled_iterator.h | 58 TJournaledString journaledString; in testJournaledStringIteratorDifference() local 70 TJournaledString journaledString; in testJournaledStringIteratorDifference() local 83 TJournaledString journaledString; in testJournaledStringIteratorDifference() local 96 TJournaledString journaledString; in testJournaledStringIteratorDifference() local 117 TJournaledString journaledString; in testJournaledStringIteratorSum() local 157 TJournaledString journaledString; in testJournaledStringIteratorRelations() local
|
H A D | test_sequence_journaled.h | 192 String<char, Journaled<Alloc<void>, TStringJournalSpec> > journaledString; in testJournaledStringHost() local 235 TJournaledString journaledString; in testJournaledStringEmpty() local 240 TJournaledString journaledString; in testJournaledStringEmpty() local 246 TJournaledString journaledString; in testJournaledStringEmpty() local 252 TJournaledString journaledString; in testJournaledStringEmpty() local 1111 TJournaledString journaledString; in testJournaledStringSegmentsReadOnly() local
|