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Searched defs:lookup_wrap (Results 1 – 25 of 37) sorted by relevance

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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_nascan.c284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject()
555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1()
637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1()
717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1()
798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2()
1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any()
1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1()
2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1()
2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1()
2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1()
[all …]
H A Dblast_aascan.c48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject()
134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject()
235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject()
458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject()
561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
H A Dna_ungapped.c48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup()
79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup()
110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup()
456 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked()
513 const LookupTableWrap* lookup_wrap, in s_TypeOfWord()
963 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect()
1051 LookupTableWrap * lookup_wrap, in s_BlastNaExtend()
1485 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend()
1698 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder()
1930 LookupTableWrap * lookup_wrap, in JumperNaWordFinder()
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H A Dphi_extend.c56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
H A Dblast_engine.c1099 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures()
1224 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine()
1442 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen()
1463 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine()
1731 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch()
1754 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt()
1835 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
H A Dlookup_wrap.c71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
H A Daa_ungapped.c289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit()
442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit()
624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit()
715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
H A Dphi_lookup.c724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_nascan.c284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject()
555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1()
637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1()
717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1()
798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2()
1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any()
1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1()
2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1()
2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1()
2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1()
[all …]
H A Dblast_aascan.c48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject()
134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject()
235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject()
458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject()
561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
H A Dna_ungapped.c48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup()
79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup()
110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup()
459 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked()
516 const LookupTableWrap* lookup_wrap, in s_TypeOfWord()
966 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect()
1054 LookupTableWrap * lookup_wrap, in s_BlastNaExtend()
1488 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend()
1701 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder()
1933 LookupTableWrap * lookup_wrap, in JumperNaWordFinder()
[all …]
H A Dphi_extend.c56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
H A Dblast_engine.c973 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures()
1101 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine()
1319 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen()
1340 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine()
1617 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch()
1640 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt()
1732 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
H A Dlookup_wrap.c71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
H A Daa_ungapped.c289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit()
442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit()
624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit()
715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
H A Dphi_lookup.c724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_nascan.c284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject()
555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1()
637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1()
717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1()
798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2()
1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any()
1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1()
2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1()
2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1()
2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1()
[all …]
H A Dblast_aascan.c48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject()
134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject()
235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject()
458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject()
561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
H A Dna_ungapped.c48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup()
79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup()
110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup()
459 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked()
516 const LookupTableWrap* lookup_wrap, in s_TypeOfWord()
966 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect()
1054 LookupTableWrap * lookup_wrap, in s_BlastNaExtend()
1488 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend()
1701 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder()
1933 LookupTableWrap * lookup_wrap, in JumperNaWordFinder()
[all …]
H A Dphi_extend.c56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
H A Dblast_engine.c973 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures()
1101 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine()
1319 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen()
1340 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine()
1617 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch()
1640 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt()
1732 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
H A Dlookup_wrap.c71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
H A Daa_ungapped.c289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit()
442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit()
624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit()
715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
H A Dphi_lookup.c724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_api.c321 LookupTableWrap* lookup_wrap, BlastScoreBlk* sbp, in s_BlastThreadManager()
595 LookupTableWrap* lookup_wrap = NULL; in Blast_RunSearch() local

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