/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_nascan.c | 284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject() 555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1() 637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1() 717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1() 798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2() 1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any() 1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1() 2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1() 2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1() 2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1() [all …]
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H A D | blast_aascan.c | 48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject() 134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject() 235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject() 458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject() 561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
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H A D | na_ungapped.c | 48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup() 79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup() 110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup() 456 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked() 513 const LookupTableWrap* lookup_wrap, in s_TypeOfWord() 963 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect() 1051 LookupTableWrap * lookup_wrap, in s_BlastNaExtend() 1485 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend() 1698 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder() 1930 LookupTableWrap * lookup_wrap, in JumperNaWordFinder() [all …]
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H A D | phi_extend.c | 56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
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H A D | blast_engine.c | 1099 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures() 1224 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine() 1442 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen() 1463 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine() 1731 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch() 1754 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt() 1835 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
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H A D | lookup_wrap.c | 71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
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H A D | aa_ungapped.c | 289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit() 442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit() 624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit() 715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
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H A D | phi_lookup.c | 724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_nascan.c | 284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject() 555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1() 637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1() 717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1() 798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2() 1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any() 1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1() 2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1() 2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1() 2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1() [all …]
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H A D | blast_aascan.c | 48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject() 134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject() 235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject() 458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject() 561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
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H A D | na_ungapped.c | 48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup() 79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup() 110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup() 459 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked() 516 const LookupTableWrap* lookup_wrap, in s_TypeOfWord() 966 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect() 1054 LookupTableWrap * lookup_wrap, in s_BlastNaExtend() 1488 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend() 1701 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder() 1933 LookupTableWrap * lookup_wrap, in JumperNaWordFinder() [all …]
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H A D | phi_extend.c | 56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
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H A D | blast_engine.c | 973 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures() 1101 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine() 1319 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen() 1340 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine() 1617 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch() 1640 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt() 1732 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
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H A D | lookup_wrap.c | 71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
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H A D | aa_ungapped.c | 289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit() 442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit() 624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit() 715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
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H A D | phi_lookup.c | 724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_nascan.c | 284 static void s_NaChooseScanSubject(LookupTableWrap *lookup_wrap) in s_NaChooseScanSubject() 555 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_4_1() 637 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_5_1() 717 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_1() 798 const LookupTableWrap * lookup_wrap, in s_BlastSmallNaScanSubject_6_2() 1482 static Int4 s_MBScanSubject_Any(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_Any() 1639 static Int4 s_MBScanSubject_9_1(const LookupTableWrap* lookup_wrap, in s_MBScanSubject_9_1() 2290 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_TwoTemplates_1() 2382 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_18_1() 2495 const LookupTableWrap* lookup_wrap, in s_MB_DiscWordScanSubject_11_21_1() [all …]
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H A D | blast_aascan.c | 48 static Int4 s_BlastAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastAaScanSubject() 134 static Int4 s_BlastSmallAaScanSubject(const LookupTableWrap * lookup_wrap, in s_BlastSmallAaScanSubject() 235 const LookupTableWrap * lookup_wrap, in s_BlastCompressedAaScanSubject() 458 Int4 BlastRPSScanSubject(const LookupTableWrap * lookup_wrap, in BlastRPSScanSubject() 561 void BlastChooseProteinScanSubject(LookupTableWrap *lookup_wrap) in BlastChooseProteinScanSubject()
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H A D | na_ungapped.c | 48 s_MBLookup(const LookupTableWrap *lookup_wrap, in s_MBLookup() 79 s_SmallNaLookup(const LookupTableWrap *lookup_wrap, in s_SmallNaLookup() 110 s_NaLookup(const LookupTableWrap *lookup_wrap, in s_NaLookup() 459 s_IsSeedMasked(const LookupTableWrap * lookup_wrap, in s_IsSeedMasked() 516 const LookupTableWrap* lookup_wrap, in s_TypeOfWord() 966 LookupTableWrap * lookup_wrap, in s_BlastNaExtendDirect() 1054 LookupTableWrap * lookup_wrap, in s_BlastNaExtend() 1488 LookupTableWrap * lookup_wrap, in s_BlastSmallNaExtend() 1701 LookupTableWrap * lookup_wrap, in MB_IndexedWordFinder() 1933 LookupTableWrap * lookup_wrap, in JumperNaWordFinder() [all …]
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H A D | phi_extend.c | 56 LookupTableWrap* lookup_wrap, in PHIBlastWordFinder()
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H A D | blast_engine.c | 973 LookupTableWrap* lookup_wrap, in s_BlastSetUpAuxStructures() 1101 LookupTableWrap* lookup_wrap, BlastCoreAuxStruct* aux_struct, in s_RPSPreliminarySearchEngine() 1319 static Int4 s_GetMinimumSubjSeqLen(LookupTableWrap* lookup_wrap) in s_GetMinimumSubjSeqLen() 1340 LookupTableWrap* lookup_wrap, in BLAST_PreliminarySearchEngine() 1617 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearch() 1640 LookupTableWrap* lookup_wrap, in Blast_RunPreliminarySearchWithInterrupt() 1732 LookupTableWrap* lookup_wrap, in Blast_RunFullSearch()
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H A D | lookup_wrap.c | 71 LookupTableWrap* lookup_wrap; in LookupTableWrapInit_MT() local
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H A D | aa_ungapped.c | 289 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_TwoHit() 442 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_TwoHit() 624 const LookupTableWrap * lookup_wrap, in s_BlastRPSWordFinder_OneHit() 715 const LookupTableWrap * lookup_wrap, in s_BlastAaWordFinder_OneHit()
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H A D | phi_lookup.c | 724 Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap, in PHIBlastScanSubject()
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
H A D | blast_api.c | 321 LookupTableWrap* lookup_wrap, BlastScoreBlk* sbp, in s_BlastThreadManager() 595 LookupTableWrap* lookup_wrap = NULL; in Blast_RunSearch() local
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