Searched defs:minDanglingBranchLength (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/readthreading/ |
| H A D | AbstractReadThreadingGraph.java | 400 …public void recoverDanglingTails(final int pruneFactor, final int minDanglingBranchLength, final b… in recoverDanglingTails()
428 …public void recoverDanglingHeads(final int pruneFactor, final int minDanglingBranchLength, final b… in recoverDanglingHeads()
461 …il(final MultiDeBruijnVertex vertex, final int pruneFactor, final int minDanglingBranchLength, fin… in recoverDanglingTail()
528 …ad(final MultiDeBruijnVertex vertex, final int pruneFactor, final int minDanglingBranchLength, fin… in recoverDanglingHead()
666 …th(final MultiDeBruijnVertex vertex, final int pruneFactor, final int minDanglingBranchLength, fin… in generateCigarAgainstDownwardsReferencePath()
699 …th(final MultiDeBruijnVertex vertex, final int pruneFactor, final int minDanglingBranchLength, fin… in generateCigarAgainstUpwardsReferencePath()
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| H A D | ReadThreadingAssembler.java | 64 private int minDanglingBranchLength = 0; field in ReadThreadingAssembler
848 public void setMinDanglingBranchLength( final int minDanglingBranchLength ) { in setMinDanglingBranchLength()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/ |
| H A D | ReadThreadingAssemblerArgumentCollection.java | 72 public int minDanglingBranchLength = 4; field in ReadThreadingAssemblerArgumentCollection
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