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Searched defs:newAtomContainer (Results 1 – 7 of 7) sorted by relevance

/dports/science/cdk/cdk-cdk-2.3/base/interfaces/src/main/java/org/openscience/cdk/interfaces/
H A DIChemObjectBuilder.java71 IAtomContainer newAtomContainer(); in newAtomContainer() method
/dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/tools/
H A DExtAtomContainerManipulator.java91 IAtomContainer newAtomContainer = container.getBuilder().newInstance(IAtomContainer.class); in makeDeepCopy() local
325 private static IAtom[] copyAtoms(IAtomContainer container, IAtomContainer newAtomContainer) { in copyAtoms()
352 …e static void copyBonds(IAtom[] atoms, IAtomContainer container, IAtomContainer newAtomContainer) { in copyBonds()
/dports/science/cdk/cdk-cdk-2.3/base/datadebug/src/main/java/org/openscience/cdk/debug/
H A DDebugChemObjectBuilder.java227 public IAtomContainer newAtomContainer() { in newAtomContainer() method in DebugChemObjectBuilder
/dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/normalize/
H A DSMSDNormalizer.java78 …IAtomContainer newAtomContainer = DefaultChemObjectBuilder.getInstance().newInstance(IAtomContaine… in makeDeepCopy() local
325 private static IAtom[] copyAtoms(IAtomContainer container, IAtomContainer newAtomContainer) { in copyAtoms()
353 …e static void copyBonds(IAtom[] atoms, IAtomContainer container, IAtomContainer newAtomContainer) { in copyBonds()
/dports/science/cdk/cdk-cdk-2.3/base/data/src/main/java/org/openscience/cdk/
H A DDefaultChemObjectBuilder.java265 public IAtomContainer newAtomContainer() { in newAtomContainer() method in DefaultChemObjectBuilder
/dports/science/cdk/cdk-cdk-2.3/base/silent/src/main/java/org/openscience/cdk/silent/
H A DSilentChemObjectBuilder.java261 public IAtomContainer newAtomContainer() { in newAtomContainer() method in SilentChemObjectBuilder
/dports/science/cdk/cdk-cdk-2.3/base/data/src/test/java/org/openscience/cdk/templates/
H A DTestMoleculeFactory.java49 private static IAtomContainer newAtomContainer() { in newAtomContainer() method in TestMoleculeFactory