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Searched defs:numCigarElements (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/
H A DSplitNCigarReads.java209 final int numCigarElements = read.numCigarElements(); in splitNCigarRead() local
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/
H A DGATKRead.java485 default int numCigarElements(){ in numCigarElements() method
H A DSAMRecordToGATKReadAdapter.java362 public int numCigarElements() { in numCigarElements() method in SAMRecordToGATKReadAdapter
H A DAlignmentUtils.java255 final int numCigarElements = read.numCigarElements(); in getBasesAndBaseQualitiesAlignedOneToOne() local