| /dports/science/cdk/cdk-cdk-2.3/base/silent/src/main/java/org/openscience/cdk/silent/ |
| H A D | PDBPolymer.java | 82 public void addAtom(IPDBAtom oAtom) { in addAtom()
93 public void addAtom(IPDBAtom oAtom, IMonomer oMonomer) { in addAtom()
107 public void addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand) { in addAtom()
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| H A D | Strand.java | 130 public void addAtom(IAtom oAtom) { in addAtom()
143 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| H A D | BioPolymer.java | 79 public void addAtom(IAtom oAtom, IStrand oStrand) { in addAtom()
106 public void addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand) { in addAtom()
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| H A D | Polymer.java | 80 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| /dports/science/cdk/cdk-cdk-2.3/base/data/src/main/java/org/openscience/cdk/protein/data/ |
| H A D | PDBPolymer.java | 83 public void addAtom(IPDBAtom oAtom) { in addAtom()
94 public void addAtom(IPDBAtom oAtom, IMonomer oMonomer) { in addAtom()
108 public void addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand) { in addAtom()
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| /dports/science/cdk/cdk-cdk-2.3/base/interfaces/src/main/java/org/openscience/cdk/interfaces/ |
| H A D | IBioPolymer.java | 51 public void addAtom(IAtom oAtom); in addAtom()
60 public void addAtom(IAtom oAtom, IStrand oStrand); in addAtom()
69 public void addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand); in addAtom()
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| H A D | IPDBPolymer.java | 50 public void addAtom(IPDBAtom oAtom); in addAtom()
59 public void addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand); in addAtom()
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| H A D | IPolymer.java | 48 public void addAtom(IAtom oAtom); in addAtom()
56 public void addAtom(IAtom oAtom, IMonomer oMonomer); in addAtom()
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| H A D | IStrand.java | 78 public void addAtom(IAtom oAtom); in addAtom()
86 public void addAtom(IAtom oAtom, IMonomer oMonomer); in addAtom()
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| /dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/ChemReactions/ |
| H A D | MoleculeParser.cpp | 44 const RDKit::Atom *oAtom = mol[*(atItP.first++)]; in testForSameRXNRoleOfAllMoleculeAtoms() local
58 const RDKit::Atom *oAtom = mol[*(atItP.first++)]; in getRXNRoleOfMolecule() local
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| H A D | ReactionWriter.cpp | 47 RDKit::Atom *oAtom = mol[*(atItP.first++)]; in setRXNRoleOfAllMoleculeAtoms() local
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| /dports/science/cdk/cdk-cdk-2.3/base/data/src/main/java/org/openscience/cdk/ |
| H A D | Strand.java | 130 public void addAtom(IAtom oAtom) { in addAtom()
143 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| H A D | BioPolymer.java | 79 public void addAtom(IAtom oAtom, IStrand oStrand) { in addAtom()
106 public void addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand) { in addAtom()
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| H A D | Polymer.java | 80 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| /dports/science/cdk/cdk-cdk-2.3/storage/pdb/src/main/java/org/openscience/cdk/protein/data/ |
| H A D | PDBStrand.java | 67 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| /dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/ |
| H A D | Renumber.cpp | 40 const Atom *oAtom = mol.getAtomWithIdx(oIdx); in renumberAtoms() local
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| /dports/science/cdk/cdk-cdk-2.3/storage/pdb/src/main/java/org/openscience/cdk/io/ |
| H A D | PDBReader.java | 219 PDBAtom oAtom; in readChemFile() local
641 PDBAtom oAtom = new PDBAtom(symbol, new Point3d(Double.parseDouble(cLine.substring(30, 38)), in readAtom() local
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| /dports/science/cdk/cdk-cdk-2.3/base/datadebug/src/main/java/org/openscience/cdk/debug/ |
| H A D | DebugBioPolymer.java | 723 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
758 public void addAtom(IAtom oAtom, IStrand oStrand) { in addAtom()
765 public void addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand) { in addAtom()
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| H A D | DebugPolymer.java | 722 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| H A D | DebugStrand.java | 743 public void addAtom(IAtom oAtom, IMonomer oMonomer) { in addAtom()
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| /dports/graphics/libraw/LibRaw-0.20.2/src/metadata/ |
| H A D | cr3_parser.cpp | 212 unsigned long long oAtom, szAtom; // Atom offset and Atom size in parseCR3() local
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| /dports/graphics/darktable38/darktable-3.8.0/src/external/LibRaw/src/metadata/ |
| H A D | cr3_parser.cpp | 226 INT64 oAtom, szAtom; // Atom offset and Atom size in parseCR3() local
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| /dports/graphics/digikam/digikam-7.4.0/core/libs/rawengine/libraw/src/metadata/ |
| H A D | cr3_parser.cpp | 226 INT64 oAtom, szAtom; // Atom offset and Atom size in parseCR3() local
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| /dports/science/cdk/cdk-cdk-2.3/storage/pdb/src/test/java/org/openscience/cdk/io/ |
| H A D | PDBReaderTest.java | 160 IPDBAtom oAtom = (IPDBAtom) nAtom; in testPDBFileCoffein() local
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| /dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Subgraphs/ |
| H A D | Subgraphs.cpp | 579 int oAtom = mol.getBondWithIdx(bondIdx)->getOtherAtomIdx(startAtom); in findAtomEnvironmentOfRadiusN() local
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