| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_fragment.h | 53 TPos2 & pos_j) in _getOtherSequenceAndProject()
161 TFragPos pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_aligngraph.h | 55 TPos2 & pos_j) in _getOtherSequenceAndProject()
185 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_align.h | 124 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_exact.h | 63 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
307 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| H A D | graph_algorithm_refine_exact_iterative.h | 67 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
336 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_fragment.h | 53 TPos2 & pos_j) in _getOtherSequenceAndProject()
161 TFragPos pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_aligngraph.h | 55 TPos2 & pos_j) in _getOtherSequenceAndProject()
185 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_align.h | 124 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_exact.h | 63 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
307 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| /dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
| H A D | graph_algorithm_refine_fragment.h | 55 TValue & pos_j) in _getOtherSequenceAndProject()
167 TFragPos pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_aligngraph.h | 55 TValue & pos_j) in _getOtherSequenceAndProject()
186 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_align.h | 113 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_exact.h | 65 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
314 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| H A D | graph_algorithm_refine_exact_iterative.h | 65 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
330 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_fragment.h | 53 TPos2 & pos_j) in _getOtherSequenceAndProject()
165 TFragPos pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_aligngraph.h | 55 TPos2 & pos_j) in _getOtherSequenceAndProject()
187 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_align.h | 126 TValue pos_j, in _getRefinedMatchScore()
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| H A D | graph_algorithm_refine_exact.h | 64 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
313 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| H A D | graph_algorithm_refine_exact_iterative.h | 68 _updateCutPosition(Fragment<TSize, ExactReversableFragment<TSpec> > & f, TPos & pos_j) in _updateCutPosition()
341 TValue seq_j_id,pos_j; in _makeRefinedGraphEdges() local
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| /dports/math/z3/z3-z3-4.8.13/src/math/lp/ |
| H A D | u_set.h | 50 unsigned pos_j = m_data[j]; in erase() local
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| /dports/math/py-z3-solver/z3-z3-4.8.10/src/math/lp/ |
| H A D | u_set.h | 50 unsigned pos_j = m_data[j]; in erase() local
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| /dports/databases/xapian-core/xapian-core-1.4.18/common/ |
| H A D | bitstream.cc | 223 Xapian::termpos pos_j, Xapian::termpos pos_k) in decode_interpolative()
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| H A D | bitstream.h | 78 Xapian::termpos pos_j; member
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| /dports/science/chrono/chrono-7.0.1/src/chrono_fsi/physics/ |
| H A D | ChFsiForceIISPH.cu | 276 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_dij_pj() local
338 Real3 pos_j = mR3(sortedPosRad[j]); in CalcNumber_Contacts() local
441 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_summGradW() local
550 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_BC_aij_Bi() local
628 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_BC_aij_Bi() local
701 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_fluid_aij_Bi() local
1022 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_Pressure() local
1083 Real3 pos_j = mR3(sortedPosRad[j]); in Calc_Pressure() local
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| /dports/science/openbabel/openbabel-3.1.1/src/ |
| H A D | forcefield.cpp | 3608 double OBForceField::VectorBondDerivative(double *pos_i, double *pos_j, in VectorBondDerivative()
3629 …double OBForceField::VectorDistanceDerivative(const double* const pos_i, const double* const pos_j, in VectorDistanceDerivative()
3708 double OBForceField::VectorAngleDerivative(double *pos_i, double *pos_j, double *pos_k, in VectorAngleDerivative()
3779 double OBForceField::VectorAngle(double *pos_i, double *pos_j, double *pos_k) in VectorAngle()
3939 …double OBForceField::VectorOOPDerivative(double *pos_i, double *pos_j, double *pos_k, double *pos_… in VectorOOPDerivative()
4058 double OBForceField::VectorOOP(double *pos_i, double *pos_j, double *pos_k, double *pos_l) in VectorOOP()
4182 …double OBForceField::VectorTorsionDerivative(double *pos_i, double *pos_j, double *pos_k, double *… in VectorTorsionDerivative()
4277 double OBForceField::VectorTorsion(double *pos_i, double *pos_j, double *pos_k, double *pos_l) in VectorTorsion()
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