| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_objmgr.cpp | 501 string prot_seq; in GetProtein() local
523 string prot_seq; in GetProtein() local
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| /dports/biology/fasta/fasta/ |
| H A D | lx_band2.c | 26 extern lx_align(char *prot_seq, /* array with protein sequence numbers*/ in lx_align()
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| H A D | lx_align3.c | 42 extern int pro_dna(char *prot_seq, /* array with protein sequence numbers*/ in pro_dna()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_util.c | 429 Int4 nt_length, Int2 frame, Uint1* prot_seq, const Uint1* genetic_code) in BLAST_GetTranslation()
509 const Uint1* nt_seq, Int2 frame, Uint1* prot_seq) in BLAST_TranslateCompressedSequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_util.c | 429 Int4 nt_length, Int2 frame, Uint1* prot_seq, const Uint1* genetic_code) in BLAST_GetTranslation()
509 const Uint1* nt_seq, Int2 frame, Uint1* prot_seq) in BLAST_TranslateCompressedSequence()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_util.c | 429 Int4 nt_length, Int2 frame, Uint1* prot_seq, const Uint1* genetic_code) in BLAST_GetTranslation()
509 const Uint1* nt_seq, Int2 frame, Uint1* prot_seq) in BLAST_TranslateCompressedSequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/unit_test_util/ |
| H A D | unit_test_util.cpp | 1181 CRef<objects::CSeq_entry> prot_seq; in AdjustProtFeatForNucProtSet() local
1202 CRef<objects::CSeq_entry> prot_seq; in SetNucProtSetProductName() local
1327 CRef<objects::CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in MakeNucProtSet3Partial() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | gap_trim.cpp | 347 CRef<CBioseq> prot_seq(new CBioseq); in AdjustProteinSeq() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | gap_trim.cpp | 347 CRef<CBioseq> prot_seq(new CBioseq); in AdjustProteinSeq() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/ |
| H A D | unit_test_cds_fix.cpp | 275 CRef<CSeq_entry> prot_seq = unit_test_util::GetProteinSequenceFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | cdregion_validator.cpp | 1707 string prot_seq; in x_ValidateConflict() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/unit_test/ |
| H A D | unit_test_validator.cpp | 11771 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
12889 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
12980 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
13016 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
13154 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
14112 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
14125 CRef<CSeq_entry> prot_seq = entry->SetSet().SetSeq_set().back(); in BOOST_AUTO_TEST_CASE() local
14989 CRef<CSeq_entry> prot_seq = unit_test_util::GetProteinSequenceFromGoodNucProtSet (entry); in ChangeGoodNucProtSetIdToGenbankName() local
18543 CRef<CSeq_entry> prot_seq = unit_test_util::GetProteinSequenceFromGoodNucProtSet(entry); in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | dropfx2.c | 1261 lx_band(const unsigned char *prot_seq, /* array with protein sequence numbers*/
1464 pro_dna(const unsigned char *prot_seq, /* array with prot. seq. numbers*/
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| H A D | dropfx.c | 1259 lx_band(const unsigned char *prot_seq, /* array with protein sequence numbers*/
1462 pro_dna(const unsigned char *prot_seq, /* array with prot. seq. numbers*/
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| H A D | dropfz3.c | 1398 int lx_band(const unsigned char *prot_seq, /* array with protein sequence numbers*/
1586 pro_dna(const unsigned char *prot_seq, /* array with prot. seq. numbers*/
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| H A D | dropfz2.c | 1398 int lx_band(const unsigned char *prot_seq, /* array with protein sequence numbers*/
1586 pro_dna(const unsigned char *prot_seq, /* array with prot. seq. numbers*/
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blast.c | 6607 Uint1Ptr prot_seq; in BLASTPerform2PassSearch() local
6714 Uint1Ptr prot_seq; in BLASTPerformFinalSearch() local
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| H A D | blastutl.c | 4033 BlastTranslateUnambiguousSequence(BlastSearchBlkPtr search, Int4 length, Uint1Ptr prot_seq, Uint1Pt… in BlastTranslateUnambiguousSequence()
6597 Uint1Ptr prot_seq; in GetTranslation() local
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin1.c | 15878 CharPtr prot_seq, ptr; in AddCodingRegionFromWizard() local
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