| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/demo/ |
| H A D | kblastthr.cpp | 73 CRef<CBlastQueryVector> q_vec(new CBlastQueryVector()); in s_GetBlastQueryVector() local
151 CRef<CBlastQueryVector> q_vec = s_GetBlastQueryVector(query_vector); in Main() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_format/ |
| H A D | blast_format_unit_test.cpp | 101 CRef<CBlastQueryVector> q_vec(new CBlastQueryVector); in BOOST_AUTO_TEST_CASE() local
149 CRef<CBlastQueryVector> q_vec(new CBlastQueryVector); in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_format/ |
| H A D | blast_format_unit_test.cpp | 101 CRef<CBlastQueryVector> q_vec(new CBlastQueryVector); in BOOST_AUTO_TEST_CASE() local
149 CRef<CBlastQueryVector> q_vec(new CBlastQueryVector); in BOOST_AUTO_TEST_CASE() local
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| /dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/lib/colvars/ |
| H A D | colvartypes.h | 988 cvm::rvector const q_vec = q.get_vector(); in spin_angle() local
999 cvm::rvector const q_vec = q.get_vector(); in dspin_angle_dq() local
1025 cvm::rvector const q_vec = q.get_vector(); in cos_theta() local
1040 cvm::rvector const q_vec = q.get_vector(); in dcos_theta_dq() local
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| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhblits.cpp | 911 void HHblits::RescoreWithViterbiKeepAlignment(HMMSimd& q_vec, in RescoreWithViterbiKeepAlignment()
973 void HHblits::perform_realign(HMMSimd& q_vec, const char input_format, in perform_realign()
1078 HMMSimd q_vec(par.maxres); in run() local
1467 HMMSimd q_vec(par.maxres); in run() local
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| H A D | hhalign.cpp | 605 HMMSimd q_vec(par.maxres); in run() local
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| /dports/science/lammps/lammps-stable_29Sep2021/lib/colvars/ |
| H A D | colvartypes.h | 1425 cvm::rvector const q_vec = q.get_vector(); in spin_angle() local
1436 cvm::rvector const q_vec = q.get_vector(); in dspin_angle_dq() local
1460 cvm::rvector const q_vec = q.get_vector(); in cos_theta() local
1475 cvm::rvector const q_vec = q.get_vector(); in dcos_theta_dq() local
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| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | vc.cpp | 114 void VC::WriteFile_qs(const gsl_vector *s_vec, const gsl_vector *q_vec, in WriteFile_qs()
793 map<string, size_t> &mapRS2nsamp, gsl_vector *q_vec, in ReadFile_beta()
1310 const gsl_matrix *Svar_mat, const gsl_vector *q_vec, in CalcVCss()
1523 gsl_vector *q_vec = gsl_vector_alloc(n_vc); in CalcVChe() local
1953 gsl_vector *q_vec = gsl_vector_alloc(n_vc); in CalcVCacl() local
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| H A D | gemma_io.cpp | 3946 gsl_vector *q_vec, gsl_vector *s_vec, size_t &ni) { in ReadFile_study()
3996 gsl_vector *q_vec, gsl_vector *s_vec, size_t &ni) { in ReadFile_mstudy()
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| /dports/math/geogram/geogram-1.7.7/src/lib/geogram/third_party/HLBFGS/ |
| H A D | HLBFGS.cpp | 295 std::vector<double> q_vec(N), g_vec(N), alpha_vec(M <= 0 ? 0 : M), rho_vec( in HLBFGS() local
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| /dports/math/cvc4/CVC4-1.7/src/theory/arith/ |
| H A D | normal_form.cpp | 569 std::vector<Monomial> q_vec, r_vec; in computeQR() local
|