| /dports/astro/phd2/phd2-2.6.10/ |
| H A D | cam_qhy.cpp | 232 std::string qid; in Connect() local
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| /dports/audio/amarok/amarok-3e11ccdd1417e70486eaaa84d8475182eec44c20/src/core-impl/collections/playdarcollection/support/ |
| H A D | Query.cpp | 38 Query::Query( const QString &qid, in Query()
69 Query::qid() const in qid() function in Playdar::Query
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| /dports/biology/abyss/abyss-2.3.1/KAligner/ |
| H A D | Aligner.cpp | 75 const string& qid, const Sequence& seq, in alignRead()
182 const string& qid, const string& seq, in coalesceAlignments()
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | CompareSSU.java | 373 final int qid=(int)query.numericID; in processRead() local
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| H A D | SketchSearcher.java | 223 final int qid=q.taxID; in passesTax() local
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| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | bt2_dp.cpp | 709 size_t qid = 0; in main() local
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
| H A D | hhalignment-C.h | 955 Alignment::FilterForDisplay(int max_seqid, int coverage, int qid, float qsc, int N) in FilterForDisplay()
998 inline int Alignment::Filter(int max_seqid, int coverage, int qid, float qsc, int N) in Filter()
1025 Alignment::Filter2(char keep[], int coverage, int qid, float qsc, int seqid1, int seqid2, int Ndiff) in Filter2()
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| H A D | hhdecl-C.h | 125 int qid; // Minimum sequence identity with query sequence (sequence 0) variable
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| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhalignment.cpp | 1415 const float S[20][20], int coverage, int qid, in FilterForDisplay()
1469 int qid, float qsc, int N) { in Filter()
1596 int Alignment::Filter2(char keep[], int coverage, int qid, float qsc, in Filter2()
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| H A D | hhdecl.h | 187 int qid; // Minimum sequence identity with query sequence (sequence 0) variable
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| H A D | hhhmm.cpp | 2143 const int coverage, const int qid, const int Ndiff, const float qsc, in WriteToFile()
2170 const int coverage, const int qid, const int Ndiff, const float qsc, in WriteToFile()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | discordance.cpp | 294 int id, qid; in computeGeneConcordance() local
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| H A D | quartet.cpp | 769 int64_t qid = 0; in computeQuartetLikelihoods() local
844 …for (int64_t qid = 0; qid < params->lmap_num_quartets; qid++) { /*** draw lmap_num_quartets quarte… in computeQuartetLikelihoods() local
1372 int64_t qid; in doLikelihoodMapping() local
1535 int64_t qid; in reportLikelihoodMapping() local
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| /dports/biology/jalview/jalview/src/jalview/gui/ |
| H A D | UserQuestionnaireCheck.java | 55 String qid = null, rid = null; field in UserQuestionnaireCheck
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| /dports/biology/mmseqs2/MMseqs2-13-45111/src/alignment/ |
| H A D | MsaFilter.cpp | 62 …SAResult &msa, std::vector<Matcher::result_t> &alnResults, int coverage, int qid, float qsc, int m… in filter()
79 size_t MsaFilter::filter(const int N_in, const int L, const int coverage, const int qid, in filter()
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| /dports/biology/mmseqs2/MMseqs2-13-45111/src/commons/ |
| H A D | Parameters.h | 479 float qid; variable
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_hits.c | 2388 int index, opid, qid, sid; in s_CutOffGapEditScript() local
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| H A D | hspfilter_besthit.c | 89 s_ExportToHitlist(int qid, in s_ExportToHitlist()
146 s_ImportFromHitlist(int qid, in s_ImportFromHitlist()
197 int qid, sid; in s_BlastHSPBestHitFinal() local
240 Int4 i, qid, qlen, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun() local
361 Int4 i, qid, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun_RPS() local
522 int qid, sid, num_list; in s_BlastHSPBestHitPipeRun() local
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| H A D | hspfilter_culling.c | 503 int cid, qid, sid, id, new_allocated; in s_BlastHSPCullingFinal() local
702 int qid, sid, num_list; in s_BlastHSPCullingPipeRun() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
| H A D | blast_format.cpp | 1896 CConstRef<CSeq_id> qid = results.GetSeqId(); in x_ReverseQuery() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/igblast/ |
| H A D | igblast.cpp | 1733 CConstRef<CSeq_id> qid = m_Query->GetBlastSearchQuery(iq)->GetQueryId(); in x_ConvertResultType() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/proteinkmer/unit_test/ |
| H A D | proteinkmer_unit_test.cpp | 96 CRef<CSeq_id> qid(new CSeq_id("gi|129296")); in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | bl2seq_unit_test.cpp | 1639 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
1877 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
1891 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2000 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2021 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2051 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2071 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2086 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2103 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
2131 CSeq_id qid("gi|555"); in BOOST_AUTO_TEST_CASE() local
[all …]
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| H A D | blastextend_unit_test.cpp | 257 CSeq_id qid("gi|2655203"); in BOOST_FIXTURE_TEST_SUITE() local
343 CSeq_id qid("gi|2655203"); in BOOST_AUTO_TEST_CASE() local
456 CSeq_id qid("gi|156523973"); in BOOST_AUTO_TEST_CASE() local
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| H A D | blastfilter_unit_test.cpp | 2042 CSeq_id qid("gi|3417288"); in BOOST_AUTO_TEST_CASE() local
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