| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | chimera.c | 823 char left1_alt, left2_alt, right2_alt, right1_alt; in find_exonexon_fwd() local
961 char left1_alt, left2_alt, right2_alt, right1_alt; in find_exonexon_rev() local
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| H A D | dynprog_genome.c | 888 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in bridge_intron_gap_8_site_level() local
1761 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in bridge_intron_gap_16_site_level() local
2482 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in bridge_intron_gap_site_level() local
3011 char left1, left1_alt, left2, left2_alt, right2, right2_alt, right1, right1_alt; in genome_gap_simple() local
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| H A D | dynprog_single.c | 906 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in Dynprog_microexon_int() local
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| H A D | pairpool.c | 1090 char left1_alt, left2_alt, right2_alt, right1_alt; in Pairpool_add_genomeskip() local
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| H A D | stage3.c | 1750 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt, c2, c2_alt; in assign_gap_types() local
2034 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt, c2, c2_alt; in assign_intron_probs() local
2450 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in add_dualbreak() local
5002 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt, c1, c2, c2_alt; in fill_in_gaps() local
9365 char left1, left2, right2, right1, left1_alt, left2_alt, right2_alt, right1_alt; in traverse_genome_gap() local
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