Searched defs:rsq_cutoff (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gcta/gcta_1.26.0_src/ |
| H A D | ld.cpp | 235 void gcta::rm_cor_snp(int m, int start, float *rsq, double rsq_cutoff, vector<int> &rm_snp_ID1) in rm_cor_snp()
273 void gcta::calcu_mean_rsq(int wind_size, double rsq_cutoff, bool dominance_flag) in calcu_mean_rsq()
370 …&mean_rsq, eigenVector &snp_num, eigenVector &max_rsq, bool second, double rsq_cutoff, bool domina… in calcu_ld_blk()
445 …size, int size_limit, MatrixXf &X_sub, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector… in calcu_ld_blk_split()
500 void gcta::calcu_mean_rsq_multiSet(string snpset_filenames_file, int wind_size, double rsq_cutoff, … in calcu_mean_rsq_multiSet()
589 …r<eigenVector> &snp_num, vector<eigenVector> &max_rsq, bool second, double rsq_cutoff, bool domina… in calcu_ld_blk_multiSet()
685 …X_sub2, vector<int> &used_in_this_set, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector… in calcu_ld_blk_split_multiSet()
743 void gcta::ld_seg(string i_ld_file, int seg_size, int wind_size, double rsq_cutoff, bool dominance_… in ld_seg()
907 void gcta::calcu_max_ld_rsq(int wind_size, double rsq_cutoff, bool dominance_flag) in calcu_max_ld_rsq()
973 …, eigenVector &max_rsq, vector<int> &max_pos, vector<int> &brk_pnt, double rsq_cutoff, bool domina… in calcu_max_ld_rsq_blk()
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| H A D | mkl.cpp | 492 void gcta::LD_pruning_mkl(double rsq_cutoff, int wind_size) { in LD_pruning_mkl()
525 void gcta::LD_pruning_blk_mkl(float *X, vector<int> &brk_pnt, double rsq_cutoff, vector<int> &rm_sn… in LD_pruning_blk_mkl()
559 void gcta::calcu_mean_rsq_mkl(int wind_size, double rsq_cutoff) in calcu_mean_rsq_mkl()
606 … eigenVector &mean_rsq, eigenVector &snp_num, eigenVector &max_rsq, bool second, double rsq_cutoff) in calcu_ld_blk_mkl()
680 …kl(int size, int size_limit, float *X_sub, vector<double> &ssx_sub, double rsq_cutoff, vector<doub… in calcu_ld_blk_split_mkl()
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| H A D | data.cpp | 1104 void gcta::filter_impRsq(double rsq_cutoff) in filter_impRsq()
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