Searched defs:sam_flag (Results 1 – 3 of 3) sorted by relevance
337 uint32_t sam_flag) in create_hit()366 uint32_t sam_flag) in create_hit()385 CuffStrand use_stranded_protocol(uint32_t sam_flag, MateStrandMapping msm) in use_stranded_protocol()424 uint32_t sam_flag = hit_buf->core.flag; in get_hit_from_bam1t() local787 int sam_flag = atoi(sam_flag_str); in read_next_hit() local
95 uint32_t sam_flag = 0; in print_scaff_as_sam() local
363 static void write_sam_cigar(kstring_t *s, int sam_flag, int in_tag, int qlen, const mm_reg1_t *r, i… in write_sam_cigar()