| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/genotyper/ |
| H A D | SampleListUnitTest.java | 19 final SampleList sampleList = new IndexedSampleList(samples); in testAsList() local
26 final SampleList sampleList = new IndexedSampleList(samples); in testAsSet() local
33 final SampleList sampleList = SampleList.emptySampleList(); in testEmpty() local
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| H A D | SampleListUtilsUnitTest.java | 18 final SampleList sampleList = new IndexedSampleList(samples); in testAsList() local
46 final List<String> sampleList = new ArrayList<>(SAMPLE_COUNT[i]); in setUp() local
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| H A D | ReadLikelihoodsUnitTester.java | 21 final SampleList sampleList = SampleListUnitTester.sampleList(sampleCount); in readLikelihoods() local
61 …public static Map<String,List<GATKRead>> sampleToReads(final SampleList sampleList, final int[] re… in sampleToReads()
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| H A D | SampleListUnitTester.java | 62 public static SampleList sampleList(final int sampleCount) { in sampleList() method in SampleListUnitTester
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/genotyper/ |
| H A D | HeterogeneousPloidyModelUnitTest.java | 34 final IndexedSampleList sampleList = new IndexedSampleList(sampleNames); in testPloidyAndSampleList() local
58 final IndexedSampleList sampleList = new IndexedSampleList(sampleNames); in testBadLength() local
70 final IndexedSampleList sampleList = new IndexedSampleList(sampleNames); in testBadPloidy() local
82 final IndexedSampleList sampleList = new IndexedSampleList(sampleNames); in testBadSampleIndex() local
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| H A D | HomogeneousPloidyModelUnitTest.java | 28 final IndexedSampleList sampleList = new IndexedSampleList(sampleNames); in testPloidyAndSampleList() local
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| H A D | GenotypingDataUnitTest.java | 21 final SampleList sampleList = likelihoods; in testInstantiation() local
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| H A D | IndependentSampleGenotypesModelUnitTest.java | 25 final SampleList sampleList = SampleListUnitTester.sampleList(ploidies.length); in testCalculateLikelihoods() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/genotyper/ |
| H A D | HomogeneousPloidyModel.java | 12 private SampleList sampleList; field in HomogeneousPloidyModel
25 public HomogeneousPloidyModel(final SampleList sampleList, final int ploidy) { in HomogeneousPloidyModel()
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| H A D | HeterogeneousPloidyModel.java | 14 private final SampleList sampleList; field in HeterogeneousPloidyModel
22 public HeterogeneousPloidyModel(final SampleList sampleList, final int[] ploidies) { in HeterogeneousPloidyModel()
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| /dports/editors/yudit/yudit-3.0.7/gui/ |
| H A D | SKMapPanel.h | 54 SStringVector sampleList; variable
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| /dports/audio/libopenmpt/libopenmpt-0.6.0+release.autotools/soundlib/ |
| H A D | XMTools.cpp | 69 auto sampleList = GetSampleList(mptIns, compatibilityExport); in ConvertToXM() local
98 std::vector<SAMPLEINDEX> sampleList; // List of samples associated with this instrument in GetSampleList() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/annotator/ |
| H A D | BaseQualityUnitTest.java | 34 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in test() local
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| H A D | ReadPositionUnitTest.java | 35 final SampleList sampleList = new IndexedSampleList("SAMPLE"); in test() local
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| H A D | DepthPerAlleleBySampleUnitTest.java | 82 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in testBlowUp() local
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| H A D | CoverageUnitTest.java | 48 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in testLikelihoodsEmpty() local
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| H A D | BaseQualityRankSumTestUnitTest.java | 84 final SampleList sampleList = new IndexedSampleList(Arrays.asList(SAMPLE_1)); in testEmptyIfNoGenotypes() local
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| H A D | MappingQualityZeroUnitTest.java | 86 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in testEmptyLikelihoods() local
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| H A D | AlleleFractionGenotypeAnnotationUnitTest.java | 90 final IndexedSampleList sampleList = new IndexedSampleList(Arrays.asList("1", "2")); in testUsingReadsDataProvider() local
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| H A D | RMSMappingQualityUnitTest.java | 108 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in testEmptyLikelihoods() local
182 …final org.broadinstitute.hellbender.utils.genotyper.SampleList sampleList = new IndexedSampleList(… in testLikelihoodsEmpty_AS() local
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| /dports/net/ns3/ns-allinone-3.35/ns-3.35/src/test/ns3tcp/ |
| H A D | nsctcp-loss-test-suite.cc | 131 std::list<uint32_t> sampleList; in DoRun() local
241 std::list<uint32_t> sampleList; in DoRun() local
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| /dports/net/ns3/ns-allinone-3.35/ns-3.35/examples/error-model/ |
| H A D | simple-error-model.cc | 163 std::list<uint32_t> sampleList; in main() local
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/vcf/ |
| H A D | VcfSubsetSamples.cpp | 184 std::set<std::string>& sampleList, in readSamplesFromFile()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/angle/third_party/VK-GL-CTS/src/executor/tools/ |
| H A D | xeExtractSampleLists.cpp | 43 void writeSampleList (const char* casePath, int listNdx, const xe::ri::SampleList& sampleList) in writeSampleList()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/ |
| H A D | UniqueAltReadCountUnitTest.java | 24 final SampleList sampleList = new IndexedSampleList(sampleName); field in UniqueAltReadCountUnitTest
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