| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/genotyper/ |
| H A D | HeterogeneousPloidyModelUnitTest.java | 31 final List<String> sampleNames = new ArrayList<>(sampleCount); in testPloidyAndSampleList() local
55 final List<String> sampleNames = new ArrayList<>(sampleCount); in testBadLength() local
67 final List<String> sampleNames = new ArrayList<>(sampleCount); in testBadPloidy() local
79 final List<String> sampleNames = new ArrayList<>(sampleCount); in testBadSampleIndex() local
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| H A D | HomogeneousPloidyModelUnitTest.java | 25 final List<String> sampleNames = new ArrayList<>(sampleCount); in testPloidyAndSampleList() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/genotyper/ |
| H A D | IndexedSampleListUnitTest.java | 25 final String[] sampleNames = generateSampleNames(sampleCount,maxSampleIndex); in testArrayConstructor() local
34 final String[] sampleNames = generateSampleNames(sampleCount,maxSampleIndex); in testCollectionConstructor() local
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| /dports/math/R-cran-NMF/NMF/R/ |
| H A D | Bioc-layer.R | 285 setGeneric('sampleNames', package='Biobase') generic
287 setMethod('sampleNames', 'NMF', method
300 setMethod('sampleNames', 'NMFfitX', method
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/metadata/ |
| H A D | MetadataUtils.java | 24 …final List<String> sampleNames = header.getReadGroups().stream().map(SAMReadGroupRecord::getSample… in readSampleName() local
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/vcf_io/ |
| H A D | vcf_io_context.h | 198 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context) in sampleNames() function
205 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> const & context) in sampleNames() function
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/vcf_io/ |
| H A D | vcf_io_context.h | 198 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context) in sampleNames() function
205 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> const & context) in sampleNames() function
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/vcf_io/ |
| H A D | vcf_io_context.h | 198 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context) in sampleNames() function
205 sampleNames(VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> const & context) in sampleNames() function
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/funcotator/metadata/ |
| H A D | SamplePairExtractor.java | 51 final List<String> sampleNames = vcfHeader.getSampleNamesInOrder(); in extractPossibleTumorNormalPairs() local
|
| /dports/biology/mothur/mothur-1.46.1/source/datastructures/ |
| H A D | biomhdf5.hpp | 74 vector<string> otuNames, sampleNames, taxonomy, otuTaxonomies; member in BiomHDF5
|
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | otuassociationcommand.cpp | 229 vector<string> sampleNames = lookup->getNamesGroups(); in process() local
330 vector<string> sampleNames = lookup->getNamesGroups(); in process() local
425 vector<string> sampleNames = metadataLookup->getNamesGroups(); in readMetadata() local
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| H A D | biominfocommand.h | 48 vector<string> outputNames, otuNames, sampleNames, taxonomy; variable
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| H A D | anosimcommand.cpp | 136 vector<string> sampleNames = readMatrix.read(distanceMatrix); in execute() local
253 vector<string> sampleNames; in runANOSIM() local
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| H A D | amovacommand.cpp | 164 vector<string> sampleNames = readMatrix.read(distanceMatrix); in execute() local
284 vector<string> sampleNames; in runAMOVA() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/ |
| H A D | GetSampleName.java | 88 …final List<String> sampleNames = getHeaderForReads().getReadGroups().stream().map(s -> s.getSample… in onTraversalStart() local
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| /dports/misc/perkeep/perkeep-0.11/internal/images/ |
| H A D | images_test.go | 79 func sampleNames(t *testing.T) []string { func
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/samples/ |
| H A D | SampleDBBuilder.java | 61 public SampleDBBuilder addSamplesFromSampleNames(final Collection<String> sampleNames) { in addSamplesFromSampleNames()
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| /dports/biology/vcflib/vcflib-1.0.2/src/ |
| H A D | vcfcombine.cpp | 90 vector<string> sampleNames; in main() local
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| H A D | abba-baba.cpp | 267 vector<string> sampleNames = variantFile.sampleNames; in main() local
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
| H A D | vcfcombine.cpp | 80 vector<string> sampleNames; in main() local
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| H A D | abba-baba.cpp | 258 vector<string> sampleNames = variantFile.sampleNames; in main() local
|
| /dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
| H A D | vcfcombine.cpp | 80 vector<string> sampleNames; in main() local
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| H A D | abba-baba.cpp | 258 vector<string> sampleNames = variantFile.sampleNames; in main() local
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/locusiterator/ |
| H A D | IntervalAlignmentContextIteratorUnitTest.java | 141 final List<String> sampleNames = Collections.singletonList("NA12878"); in getAlignmentContexts() local
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| /dports/biology/bbmap/bbmap/current/var2/ |
| H A D | VCFFile.java | 240 public ArrayList<String> sampleNames=new ArrayList<String>(); field in VCFFile
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