/dports/science/py-scikit-learn/scikit-learn-1.0.2/examples/tree/ |
H A D | plot_unveil_tree_structure.py | 183 sample_ids = [0, 1] variable
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/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | plink_cluster.c | 62 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in load_clusters() 643 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_clusters() 1041 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in read_dists() 1313 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in read_genome() 1468 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in cluster_enforce_match() 2652 void write_cluster1(FILE* outfile, uint32_t clidx, char* sample_ids, uintptr_t max_sample_id_len, u… in write_cluster1() 2682 void write_cluster1_oitc(FILE* outfile, uint32_t clidx, char* sample_ids, uintptr_t max_sample_id_l… in write_cluster1_oitc() 2729 …_to_sample_uidx, uint32_t orig_within_ct, uint32_t orig_cluster_ct, char* sample_ids, uintptr_t ma… in write_cluster_solution() 2917 … sample_exclude, uintptr_t sample_ct, uint32_t* sample_idx_to_uidx, char* sample_ids, uint32_t pli… in mds_plot() 3215 … sample_exclude, uintptr_t sample_ct, uint32_t* sample_idx_to_uidx, char* sample_ids, uint32_t pli… in mds_plot_eigendecomp()
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H A D | plink_family.c | 74 …t, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in get_trios_and_families() 683 …r, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in mendel_error_scan() 1259 …el_info(Pedigree_rel_info* pri_ptr, uintptr_t unfiltered_sample_ct, char* sample_ids, uintptr_t ma… in populate_pedigree_rel_info() 1730 …_lookup, uint32_t family_ct, Aperm_info* apip, uint32_t mperm_save, char* sample_ids, uintptr_t ma… in tdt_poo() 1983 …c, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in tdt() 2535 … uintptr_t sample_ct, uintptr_t* pheno_nm, uintptr_t* founder_info, char* sample_ids, uintptr_t ma… in get_sibship_info() 3799 …c, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in dfam() 5393 …d, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in qfam() 5982 …t, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in make_pseudocontrols()
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H A D | plink_misc.c | 43 int32_t make_founders(uintptr_t unfiltered_sample_ct, uintptr_t sample_ct, char* sample_ids, uintpt… in make_founders() 119 …tptr_t* sample_exclude, uintptr_t* sex_nm, uintptr_t gender_unk_ct, char* sample_ids, uintptr_t ma… in write_nosex() 1364 …ids, uintptr_t sample_ct, uintptr_t max_sample_id_len, uint32_t* sample_id_map, char* sample_ids) { in update_sample_ids() 1674 …nfiltered_sample_ct, uintptr_t* sample_exclude, uint32_t sample_ct, char* sample_ids, uintptr_t ma… in calc_plink_maxfid() 3003 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in sexcheck() 3711 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in het_report() 4209 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in score_report()
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H A D | plink_data.c | 1196 …clude, uintptr_t sample_ct, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in load_covars() 1707 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_covars() 2291 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_fam() 2885 …_t* sample_exclude, uintptr_t sample_ct, uint32_t* sample_sort_map, char* sample_ids, uintptr_t ma… in flip_subset_init() 3684 char* sample_ids; in load_fam() local 6422 char* sample_ids = nullptr; in lgen_to_bed() local 11596 …te_first_cols(FILE* outfile, uintptr_t sample_uidx, char delimiter, char* sample_ids, uintptr_t ma… in recode_write_first_cols() 11793 …ecode_compound, char** mk_allele_ptrs, char delimiter, char delim2, char* sample_ids, uintptr_t ma… in write_ped_lines() 14361 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in sample_sort_file_map() 14710 …ample_fids, uintptr_t tot_sample_ct, uintptr_t max_sample_full_len, char* sample_ids, uintptr_t ma… in merge_sample_sortf() [all …]
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H A D | plink_homozyg.c | 412 …nt32_t* marker_pos, uintptr_t sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in write_main_roh_reports() 1333 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in roh_pool() 2426 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in calc_homozyg()
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H A D | plink_calc.c | 3250 …outname, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uintptr_t ma… in write_ids() 3273 …lc_type, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uintptr_t ma… in distance_d_write_ids() 4251 char* sample_ids = g_cg_sample_ids; in calc_genome_emitn() local 4509 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in calc_genome() 5074 …, char* outname, char* outname_end, uintptr_t unfiltered_sample_ct, char* sample_ids, uintptr_t ma… in do_rel_cutoff() 6367 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in calc_rel() 6985 … sample_ct, uintptr_t* pca_sample_exclude, uintptr_t pca_sample_ct, char* sample_ids, uintptr_t ma… in calc_pca() 7568 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in calc_distance() 8258 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in calc_cluster_neighbor()
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H A D | plink_filter.c | 1587 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in mind_filter() 1941 …_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_exclude_ct, char* sample_ids, uintptr_t ma… in calc_freqs_and_hwe() 2490 … uintptr_t* pheno_nm, uintptr_t* sex_male, uint32_t sample_male_ct, char* sample_ids, uintptr_t ma… in write_missingness_reports()
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H A D | plink_dosage.c | 492 char* sample_ids = nullptr; in plink1_dosage() local
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H A D | plink_perm.c | 708 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in make_perm_pheno()
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H A D | plink.c | 380 char* sample_ids = nullptr; in plink() local
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H A D | plink_common.c | 4263 …exclude, uint32_t sample_ct, uintptr_t max_sample_id_len, char oldc, char newc, char* sample_ids) { in sample_delim_convert()
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/dports/biology/biolibc/biolibc-0.2.1/ |
H A D | vcf.c | 132 void bl_vcf_get_sample_ids(FILE *vcf_stream, char *sample_ids[], in bl_vcf_get_sample_ids()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_psam.cc | 723 char* sample_ids = piip->sii.sample_ids; in LoadPsam() local 858 …angeList* pheno_range_list_ptr, const uintptr_t* sample_include, const char* sample_ids, uint32_t … in LoadPhenos()
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H A D | plink2_common.cc | 705 const char* sample_ids = siip->sample_ids; in CollapsedSampleFmtidInit() local 750 const char* sample_ids = siip->sample_ids; in OnlyOneFid() local 798 const char* sample_ids = siip->sample_ids; in AugidInitAlloc() local 2975 const char* sample_ids = siip->sample_ids; in WriteSampleIdsOverride() local
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H A D | plink2_common.h | 243 char* sample_ids; member
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H A D | plink2_misc.cc | 1114 …t char* family_missing_catname, const uintptr_t* sample_include, const char* sample_ids, uint32_t … in Plink1ClusterImport() 4124 const char* sample_ids = siip->sample_ids; in WriteMissingnessReports() local 7318 const char* sample_ids = siip->sample_ids; in SampleCounts() local 8998 const char* sample_ids = piip->sii.sample_ids; in WriteCovar() local
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H A D | plink2_data.cc | 816 const char* sample_ids = piip->sii.sample_ids; in WriteFam() local 887 const char* sample_ids = siip->sample_ids; in DataFidColIsRequired() local 968 const char* sample_ids = piip->sii.sample_ids; in WritePsam() local
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H A D | plink2_export.cc | 3171 const char* sample_ids = siip->sample_ids; in ExportIdpaste() local 3687 PglErr ExportOxSample(const char* outname, const uintptr_t* sample_include, const char* sample_ids,… in ExportOxSample() 9631 const char* sample_ids = piip->sii.sample_ids; variable
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H A D | plink2_filter.cc | 1221 const char* sample_ids = siip->sample_ids; in KeepOrRemove() local
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H A D | plink2_matrix_calc.cc | 4957 const char* sample_ids = siip->sample_ids; in CalcPca() local 6676 const char* sample_ids = siip->sample_ids; in ScoreReport() local
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/dports/misc/py-gluoncv/gluon-cv-0.9.0/gluoncv/torch/data/gluoncv_motion_dataset/ |
H A D | dataset.py | 815 def sample_ids(self): member in GluonCVMotionDataset
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/dports/biology/py-biom-format/biom-format-2.1.10/biom/ |
H A D | table.py | 461 def __init__(self, data, observation_ids, sample_ids, argument
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/dports/biology/ncbi-toolkit/ncbi/object/ |
H A D | objfeat.h | 1029 ValNodePtr sample_ids; member
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/dports/net-im/purple-googlechat/purple-googlechat-56ba7f7/ |
H A D | googlechat.proto | 1387 repeated string sample_ids = 7; field
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