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Searched defs:sample_ids (Results 1 – 25 of 26) sorted by relevance

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/dports/science/py-scikit-learn/scikit-learn-1.0.2/examples/tree/
H A Dplot_unveil_tree_structure.py183 sample_ids = [0, 1] variable
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_cluster.c62 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in load_clusters()
643 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_clusters()
1041 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in read_dists()
1313 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in read_genome()
1468 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in cluster_enforce_match()
2652 void write_cluster1(FILE* outfile, uint32_t clidx, char* sample_ids, uintptr_t max_sample_id_len, u… in write_cluster1()
2682 void write_cluster1_oitc(FILE* outfile, uint32_t clidx, char* sample_ids, uintptr_t max_sample_id_l… in write_cluster1_oitc()
2729 …_to_sample_uidx, uint32_t orig_within_ct, uint32_t orig_cluster_ct, char* sample_ids, uintptr_t ma… in write_cluster_solution()
2917 … sample_exclude, uintptr_t sample_ct, uint32_t* sample_idx_to_uidx, char* sample_ids, uint32_t pli… in mds_plot()
3215 … sample_exclude, uintptr_t sample_ct, uint32_t* sample_idx_to_uidx, char* sample_ids, uint32_t pli… in mds_plot_eigendecomp()
H A Dplink_family.c74 …t, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in get_trios_and_families()
683 …r, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in mendel_error_scan()
1259 …el_info(Pedigree_rel_info* pri_ptr, uintptr_t unfiltered_sample_ct, char* sample_ids, uintptr_t ma… in populate_pedigree_rel_info()
1730 …_lookup, uint32_t family_ct, Aperm_info* apip, uint32_t mperm_save, char* sample_ids, uintptr_t ma… in tdt_poo()
1983 …c, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in tdt()
2535 … uintptr_t sample_ct, uintptr_t* pheno_nm, uintptr_t* founder_info, char* sample_ids, uintptr_t ma… in get_sibship_info()
3799 …c, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in dfam()
5393 …d, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in qfam()
5982 …t, uintptr_t* founder_info, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in make_pseudocontrols()
H A Dplink_misc.c43 int32_t make_founders(uintptr_t unfiltered_sample_ct, uintptr_t sample_ct, char* sample_ids, uintpt… in make_founders()
119 …tptr_t* sample_exclude, uintptr_t* sex_nm, uintptr_t gender_unk_ct, char* sample_ids, uintptr_t ma… in write_nosex()
1364 …ids, uintptr_t sample_ct, uintptr_t max_sample_id_len, uint32_t* sample_id_map, char* sample_ids) { in update_sample_ids()
1674 …nfiltered_sample_ct, uintptr_t* sample_exclude, uint32_t sample_ct, char* sample_ids, uintptr_t ma… in calc_plink_maxfid()
3003 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in sexcheck()
3711 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in het_report()
4209 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in score_report()
H A Dplink_data.c1196 …clude, uintptr_t sample_ct, uintptr_t* sex_nm, uintptr_t* sex_male, char* sample_ids, uintptr_t ma… in load_covars()
1707 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_covars()
2291 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in write_fam()
2885 …_t* sample_exclude, uintptr_t sample_ct, uint32_t* sample_sort_map, char* sample_ids, uintptr_t ma… in flip_subset_init()
3684 char* sample_ids; in load_fam() local
6422 char* sample_ids = nullptr; in lgen_to_bed() local
11596 …te_first_cols(FILE* outfile, uintptr_t sample_uidx, char delimiter, char* sample_ids, uintptr_t ma… in recode_write_first_cols()
11793 …ecode_compound, char** mk_allele_ptrs, char delimiter, char delim2, char* sample_ids, uintptr_t ma… in write_ped_lines()
14361 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in sample_sort_file_map()
14710 …ample_fids, uintptr_t tot_sample_ct, uintptr_t max_sample_full_len, char* sample_ids, uintptr_t ma… in merge_sample_sortf()
[all …]
H A Dplink_homozyg.c412 …nt32_t* marker_pos, uintptr_t sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in write_main_roh_reports()
1333 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in roh_pool()
2426 …mple_ct, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uint32_t pli… in calc_homozyg()
H A Dplink_calc.c3250 …outname, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uintptr_t ma… in write_ids()
3273 …lc_type, uintptr_t unfiltered_sample_ct, uintptr_t* sample_exclude, char* sample_ids, uintptr_t ma… in distance_d_write_ids()
4251 char* sample_ids = g_cg_sample_ids; in calc_genome_emitn() local
4509 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in calc_genome()
5074 …, char* outname, char* outname_end, uintptr_t unfiltered_sample_ct, char* sample_ids, uintptr_t ma… in do_rel_cutoff()
6367 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in calc_rel()
6985 … sample_ct, uintptr_t* pca_sample_exclude, uintptr_t pca_sample_ct, char* sample_ids, uintptr_t ma… in calc_pca()
7568 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in calc_distance()
8258 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uint32_t pli… in calc_cluster_neighbor()
H A Dplink_filter.c1587 …le_ct, uintptr_t* sample_exclude, uintptr_t* sample_exclude_ct_ptr, char* sample_ids, uintptr_t ma… in mind_filter()
1941 …_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_exclude_ct, char* sample_ids, uintptr_t ma… in calc_freqs_and_hwe()
2490 … uintptr_t* pheno_nm, uintptr_t* sex_male, uint32_t sample_male_ct, char* sample_ids, uintptr_t ma… in write_missingness_reports()
H A Dplink_dosage.c492 char* sample_ids = nullptr; in plink1_dosage() local
H A Dplink_perm.c708 …filtered_sample_ct, uintptr_t* sample_exclude, uintptr_t sample_ct, char* sample_ids, uintptr_t ma… in make_perm_pheno()
H A Dplink.c380 char* sample_ids = nullptr; in plink() local
H A Dplink_common.c4263 …exclude, uint32_t sample_ct, uintptr_t max_sample_id_len, char oldc, char newc, char* sample_ids) { in sample_delim_convert()
/dports/biology/biolibc/biolibc-0.2.1/
H A Dvcf.c132 void bl_vcf_get_sample_ids(FILE *vcf_stream, char *sample_ids[], in bl_vcf_get_sample_ids()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_psam.cc723 char* sample_ids = piip->sii.sample_ids; in LoadPsam() local
858 …angeList* pheno_range_list_ptr, const uintptr_t* sample_include, const char* sample_ids, uint32_t … in LoadPhenos()
H A Dplink2_common.cc705 const char* sample_ids = siip->sample_ids; in CollapsedSampleFmtidInit() local
750 const char* sample_ids = siip->sample_ids; in OnlyOneFid() local
798 const char* sample_ids = siip->sample_ids; in AugidInitAlloc() local
2975 const char* sample_ids = siip->sample_ids; in WriteSampleIdsOverride() local
H A Dplink2_common.h243 char* sample_ids; member
H A Dplink2_misc.cc1114 …t char* family_missing_catname, const uintptr_t* sample_include, const char* sample_ids, uint32_t … in Plink1ClusterImport()
4124 const char* sample_ids = siip->sample_ids; in WriteMissingnessReports() local
7318 const char* sample_ids = siip->sample_ids; in SampleCounts() local
8998 const char* sample_ids = piip->sii.sample_ids; in WriteCovar() local
H A Dplink2_data.cc816 const char* sample_ids = piip->sii.sample_ids; in WriteFam() local
887 const char* sample_ids = siip->sample_ids; in DataFidColIsRequired() local
968 const char* sample_ids = piip->sii.sample_ids; in WritePsam() local
H A Dplink2_export.cc3171 const char* sample_ids = siip->sample_ids; in ExportIdpaste() local
3687 PglErr ExportOxSample(const char* outname, const uintptr_t* sample_include, const char* sample_ids,… in ExportOxSample()
9631 const char* sample_ids = piip->sii.sample_ids; variable
H A Dplink2_filter.cc1221 const char* sample_ids = siip->sample_ids; in KeepOrRemove() local
H A Dplink2_matrix_calc.cc4957 const char* sample_ids = siip->sample_ids; in CalcPca() local
6676 const char* sample_ids = siip->sample_ids; in ScoreReport() local
/dports/misc/py-gluoncv/gluon-cv-0.9.0/gluoncv/torch/data/gluoncv_motion_dataset/
H A Ddataset.py815 def sample_ids(self): member in GluonCVMotionDataset
/dports/biology/py-biom-format/biom-format-2.1.10/biom/
H A Dtable.py461 def __init__(self, data, observation_ids, sample_ids, argument
/dports/biology/ncbi-toolkit/ncbi/object/
H A Dobjfeat.h1029 ValNodePtr sample_ids; member
/dports/net-im/purple-googlechat/purple-googlechat-56ba7f7/
H A Dgooglechat.proto1387 repeated string sample_ids = 7; field

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