Searched defs:sample_idx_lowbits (Results 1 – 7 of 7) sorted by relevance
6601 const uint32_t sample_idx_lowbits = ctzw(male_word); in FixBcfMaleX3allelicGtPloidy() local6625 const uint32_t sample_idx_lowbits = ctzw(male_word); in FixBcfMaleX64allelicGtPloidy() local6835 const uint32_t sample_idx_lowbits = ctzw(geno_word1); in FillBcfMultiallelicDsForce() local6843 const uint32_t sample_idx_lowbits = ctzw(patch_01_word); in FillBcfMultiallelicDsForce() local6857 const uint32_t sample_idx_lowbits = ctzw(geno_word2); in FillBcfMultiallelicDsForce() local6881 const uint32_t sample_idx_lowbits = ctzw(geno_word2); in FillBcfMultiallelicDsForce() local7148 const uint32_t sample_idx_lowbits = ctzw(geno_word1); in FillBcfMultiallelicHdsForce() local7186 const uint32_t sample_idx_lowbits = ctzw(geno_word2); in FillBcfMultiallelicHdsForce() local7314 const uint32_t sample_idx_lowbits = ctzw(geno_word1); in FillBcfMultiallelicHdsForce() local7335 const uint32_t sample_idx_lowbits = ctzw(geno_word2); in FillBcfMultiallelicHdsForce() local[all …]
265 const uint32_t sample_idx_lowbits = ctzw(geno_word1) / 2; in LinearCombinationMeanimpute() local271 const uint32_t sample_idx_lowbits = ctzw(geno_word2) / 2; in LinearCombinationMeanimpute() local276 const uint32_t sample_idx_lowbits = ctzw(geno_missing_word) / 2; in LinearCombinationMeanimpute() local308 const uint32_t sample_idx_lowbits = ctzw(geno_word1) / 2; in LinearCombinationMeanimpute() local316 const uint32_t sample_idx_lowbits = ctzw(geno_word2) / 2; in LinearCombinationMeanimpute() local322 const uint32_t sample_idx_lowbits = ctzw(geno_missing_word) / 2; in LinearCombinationMeanimpute() local516 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != subgroup_len; ++sample_idx_lowbits) { in FloatsToDosage16() local557 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != subgroup_len; ++sample_idx_lowbits) { in DoublesToDosage16() local
4099 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfParseGqDpMain() local4211 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfParseGqDpMain() local4325 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfParseGqDpMain() local4452 for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfParseGqDpMain() local5318 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfConvertUnphasedBiallelic() local5373 for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfConvertMultiallelicHaploidInt8Gt() local5419 for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfConvertMultiallelicHaploidInt16Gt() local5489 … for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in BcfConvertUnphasedMultiallelic() local6691 const uint32_t sample_idx_lowbits = sample_idx % kBitsPerWordD2; in BcfConvertPhasedBiallelicDosage() local15465 uint32_t sample_idx_lowbits = 0; in GenerateDummyThread() local[all …]
2722 const uint32_t sample_idx_lowbits = ctzw(phasepresent_nodphase_word); in DosagePhaseinfoPatch() local
621 const uint32_t sample_idx_lowbits = ctzw(xor_word) / 2; in SaveLdDifflist() local774 const uint32_t sample_idx_lowbits = ctzw(xor_word) / 2; in SaveOnebit() local1733 for (uint32_t sample_idx_lowbits = 0; sample_idx_lowbits != loop_len; ++sample_idx_lowbits) { in PglMultiallelicDenseToSparse() local1985 const uint32_t sample_idx_lowbits = ctzw(geno_hets) / 2; in AppendHphase() local
7916 const uint32_t sample_idx_lowbits = ctzw(sample_include_word); variable8014 const uint32_t sample_idx_lowbits = ctzw(sample_include_word); variable9265 uint32_t sample_idx_lowbits = ctzw(missing_dosage_bits); in PgrGetMissingnessD() local