Searched defs:scoreD (Results 1 – 13 of 13) sorted by relevance
702 int scoreD=scoreFromDel+POINTSoff_MATCH; in fillUnlimited() local755 …int scoreD=scoreFromDel+POINTSoff_SUB; //+2 to move it as close as possible to the deletion / inse… in fillUnlimited() local805 int scoreD=scoreFromDel+(streak==0 ? POINTSoff_DEL : in fillUnlimited() local
257 SCORE scoreD = *ptrDPrev++; in GlobalAlignSS() local318 SCORE scoreD = DPrev[uLengthB-1] - g_scoreGapOpen/2; // term gaps half in GlobalAlignSS() local
304 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignSP() local368 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSP() local
365 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignLE() local429 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignLE() local
344 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignSPN() local408 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSPN() local
31 SCORE scoreD = DPD(uPrefixLengthA, uPrefixLengthB); in TraceBack() local
164 const jint scoreD=scoreFromDel+POINTSoff_MATCH; in fillUnlimited() local193 …const jint scoreD=scoreFromDel+POINTSoff_SUB; //+2 to move it as close as possible to the deletion… in fillUnlimited() local229 jint scoreD=scoreFromDel+(streak==0 ? POINTSoff_DEL : in fillUnlimited() local502 const jint scoreD=scoreFromDel_MS+POINTSoff_MATCH; in fillLimitedX() local527 …const jint scoreD=scoreFromDel_MS+POINTSoff_SUB; //+2 to move it as close as possible to the delet… in fillLimitedX() local572 jint scoreD=scoreFromDel_DEL+(streak==0 ? POINTSoff_DEL : in fillLimitedX() local
238 SCORE scoreD = *ptrDPrev++; in GlobalAlignSS() local299 SCORE scoreD = DPrev[uLengthB-1] - g_scoreGapOpen/2; // term gaps half in GlobalAlignSS() local
291 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignSP() local355 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSP() local
29 SCORE scoreD = DPD(uPrefixLengthA, uPrefixLengthB); in TraceBack() local
352 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignLE() local416 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignLE() local
326 SCORE scoreD = *ptrDPrev++ + scoreGapCloseAi_1; in GlobalAlignSPN() local390 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSPN() local
60 double *scoreD; variable