| /dports/biology/seqan1/seqan-1.3.1/seqan/chaining/ |
| H A D | score_chain_sop.h | 97 scoreMatch(Score & me) in scoreMatch() function
102 scoreMatch(Score const & me) in scoreMatch() function
148 scoreMatch(Score<TValue, ChainSoP> & me) in scoreMatch() function
154 scoreMatch(Score<TValue, ChainSoP> const & me) in scoreMatch() function
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| H A D | score_zero.h | 79 scoreMatch(Score<TValue, Zero> &) in scoreMatch() function
85 scoreMatch(Score<TValue, Zero> const &) in scoreMatch() function
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| H A D | score_manhattan.h | 103 scoreMatch(Score<TValue, Manhattan> & me) in scoreMatch() function
109 scoreMatch(Score<TValue, Manhattan> const & me) in scoreMatch() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/score/ |
| H A D | score_edit.h | 78 scoreMatch(Score<TValue, EditDistance> &) { in scoreMatch() function
85 scoreMatch(Score<TValue, EditDistance> const &) { in scoreMatch() function
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| H A D | score_simple.h | 123 scoreMatch(Score<TValue, TSpec> const & me) { in scoreMatch() function
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| /dports/biology/seqan1/seqan-1.3.1/seqan/score/ |
| H A D | score_edit.h | 79 scoreMatch(Score<TValue, EditDistance> &) { in scoreMatch() function
87 scoreMatch(Score<TValue, EditDistance> const &) { in scoreMatch() function
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| H A D | score_simple.h | 145 scoreMatch(Score<TValue, TSpec> const & me) { in scoreMatch() function
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/score/ |
| H A D | score_edit.h | 78 scoreMatch(Score<TValue, EditDistance> &) { in scoreMatch() function
85 scoreMatch(Score<TValue, EditDistance> const &) { in scoreMatch() function
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| H A D | score_simple.h | 123 scoreMatch(Score<TValue, TSpec> const & me) { in scoreMatch() function
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/score/ |
| H A D | score_edit.h | 78 scoreMatch(Score<TValue, EditDistance> &) { in scoreMatch() function
86 scoreMatch(Score<TValue, EditDistance> const &) { in scoreMatch() function
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| H A D | score_simple.h | 126 scoreMatch(Score<TValue, TSpec> const & me) { in scoreMatch() function
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| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | objscore2.cpp | 109 SCORE scoreMatch = (*g_ptrScoreMatrix)[uLetter1][uLetter2]; in ScoreSeqPairLetters() local
341 SCORE scoreMatch = 0; in ObjScoreDP_Profs() local
450 const SCORE scoreMatch = PP.m_AAScores[uLetter]; in ObjScorePS() local
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| H A D | fastscorepath2.cpp | 23 SCORE scoreMatch = 0; in FastScorePath2() local
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| H A D | tracebacksw.cpp | 57 const SCORE scoreMatch = ScoreProfPos2(PPA, PPB); in TraceBackSW() local
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| H A D | traceback.cpp | 82 const SCORE scoreMatch = ScoreProfPos2(PPA, PPB); in TraceBack() local
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | fastscorepath2.cpp | 25 SCORE scoreMatch = 0; in FastScorePath2() local
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| H A D | objscore2.cpp | 112 SCORE scoreMatch = (*g_ptrScoreMatrix)[uLetter1][uLetter2]; in ScoreSeqPairLetters() local
353 SCORE scoreMatch = 0; in ObjScoreDP_Profs() local
468 const SCORE scoreMatch = PP.m_AAScores[uLetter]; in ObjScorePS() local
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| H A D | tracebacksw.cpp | 58 const SCORE scoreMatch = ScoreProfPos2(PPA, PPB, ctx); in TraceBackSW() local
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| H A D | traceback.cpp | 84 const SCORE scoreMatch = ScoreProfPos2(PPA, PPB, ctx); in TraceBack() local
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| /dports/devel/RStudio/rstudio-2021.09.1-372/src/gwt/src/org/rstudio/studio/client/workbench/codesearch/ |
| H A D | CodeSearchOracle.java | 52 private static int scoreMatch(CodeSearchSuggestion suggestion, String query) in scoreMatch() method in CodeSearchOracle
60 public static int scoreMatch(String suggestion, String query, boolean isFile) in scoreMatch() method in CodeSearchOracle
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/consensus/ |
| H A D | consensus_alignment_options.h | 129 int scoreMatch; member
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/consensus/ |
| H A D | consensus_alignment_options.h | 129 int scoreMatch; member
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/consensus/ |
| H A D | consensus_alignment_options.h | 129 int scoreMatch; member
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| /dports/biology/clustalw/clustalw-2.1/src/alignment/ |
| H A D | ObjectiveScore.cpp | 156 int scoreMatch = 0; in scoreLetters() local
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/bs_tools/ |
| H A D | bisar.cpp | 73 double scoreMatch; member
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