| /dports/biology/seqan1/seqan-1.3.1/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 129 unsigned seqCount = length(stringSet); in complement() local
138 unsigned seqCount = length(stringSet); in complement() local
184 unsigned seqCount = length(stringSet); in reverseComplement() local
194 unsigned seqCount = length(stringSet); in reverseComplement() local
240 unsigned seqCount = length(stringSet); in toLower() local
250 unsigned seqCount = length(stringSet); in toLower() local
294 unsigned seqCount = length(stringSet); in toUpper() local
304 unsigned seqCount = length(stringSet); in toUpper() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 221 unsigned seqCount = length(stringSet); in complement() local
229 unsigned seqCount = length(stringSet); in complement() local
294 int seqCount = length(stringSet); in reverseComplement() local
305 int seqCount = length(stringSet); in reverseComplement() local
376 unsigned seqCount = length(stringSet); in toLower() local
386 unsigned seqCount = length(stringSet); in toLower() local
424 unsigned seqCount = length(stringSet); in toUpper() local
435 unsigned seqCount = length(stringSet); in toUpper() local
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 221 unsigned seqCount = length(stringSet); in complement() local
229 unsigned seqCount = length(stringSet); in complement() local
294 int seqCount = length(stringSet); in reverseComplement() local
305 int seqCount = length(stringSet); in reverseComplement() local
376 unsigned seqCount = length(stringSet); in toLower() local
386 unsigned seqCount = length(stringSet); in toLower() local
424 unsigned seqCount = length(stringSet); in toUpper() local
435 unsigned seqCount = length(stringSet); in toUpper() local
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 221 unsigned seqCount = length(stringSet); in complement() local
229 unsigned seqCount = length(stringSet); in complement() local
294 int seqCount = length(stringSet); in reverseComplement() local
305 int seqCount = length(stringSet); in reverseComplement() local
376 unsigned seqCount = length(stringSet); in toLower() local
386 unsigned seqCount = length(stringSet); in toLower() local
424 unsigned seqCount = length(stringSet); in toUpper() local
435 unsigned seqCount = length(stringSet); in toUpper() local
|
| /dports/biology/seqan1/seqan-1.3.1/demos/ |
| H A D | index_mummy.cpp | 37 int runMummy(int argc, const char *argv[], unsigned seqCount, unsigned minLen) in runMummy()
106 unsigned seqCount = 0; in main() local
|
| /dports/biology/seqan1/seqan-1.3.1/docs/ |
| H A D | index_mummy.cpp | 37 int runMummy(int argc, const char *argv[], unsigned seqCount, unsigned minLen) in runMummy()
106 unsigned seqCount = 0; in main() local
|
| /dports/biology/seqan/seqan-library-2.4.0/share/doc/seqan/html/demos/dox/index/ |
| H A D | mummy.cpp | 36 int runMummy(int argc, const char * argv[], unsigned seqCount, unsigned minLen) in runMummy()
109 unsigned seqCount = 0; in main() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/dox/index/ |
| H A D | mummy.cpp | 36 int runMummy(int argc, const char * argv[], unsigned seqCount, unsigned minLen) in runMummy()
109 unsigned seqCount = 0; in main() local
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | aln_scanner_clustal.cpp | 68 int seqCount = 0; member
213 int seqCount, in sProcessClustalDataLine()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | aln_scanner_clustal.cpp | 68 int seqCount = 0; member
213 int seqCount, in sProcessClustalDataLine()
|
| /dports/biology/seqan1/seqan-1.3.1/seqan/graph_types/ |
| H A D | graph_utility_parsing.h | 59 TSize seqCount = 0; in _loadSequences() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/ |
| H A D | efficiently_import_sequences.cpp | 26 size_t seqCount = 0; in main() local
|
| /dports/biology/seqan1/seqan-1.3.1/demos/tutorial/ |
| H A D | find_motif.cpp | 19 TSize seqCount = length(dataset); in main() local
|
| /dports/biology/seqan1/seqan-1.3.1/demos/howto/ |
| H A D | efficiently_import_sequences.cpp | 23 unsigned seqCount = length(multiSeqFile); in main() local
|
| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/ |
| H A D | MultipleSubstSubtables.cpp | 63 le_uint16 seqCount = SWAPW(sequenceCount); in process() local
|
| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/ |
| H A D | MultipleSubstSubtables.cpp | 63 le_uint16 seqCount = SWAPW(sequenceCount); in process() local
|
| /dports/biology/jalview/jalview/src/jalview/datamodel/ |
| H A D | Profile.java | 70 public Profile(int seqCount, int gaps, int max, String modalRes) in Profile()
|
| /dports/biology/jalview/jalview/test/jalview/controller/ |
| H A D | AlignViewControllerTest.java | 106 int seqCount = avc.findColumnsWithFeature("Metal", sg, bs); in testFindColumnsWithFeature() local
|
| /dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
| H A D | alignment.c | 528 getFastaAlignmentInfo (int * inp, int * seqCount, int * seqLen) in getFastaAlignmentInfo()
662 seqCount, in pllParseFASTA() local
|
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/kalign/src/kalign_tests/ |
| H A D | KalignTests.cpp | 106 int seqCount = dnaSeqs.count(); in dna_to_ma() local
355 int seqCount = dnaSeqs.count(); in dna_to_ma() local
|
| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/ |
| H A D | SeqHybridMetaIterator.hpp | 136 size_t seqCount; member in Dakota::SeqHybridMetaIterator
|
| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | SequenceSplitWorker.cpp | 187 int seqCount = 1; in sl_onTaskFinished() local
|
| /dports/biology/seqan1/seqan-1.3.1/apps/sak/ |
| H A D | sak.cpp | 90 int seqCount = length(multiFasta); in loadSeqs() local
|
| /dports/biology/seqan1/seqan-1.3.1/apps/seqan_tcoffee/ |
| H A D | seqan_tcoffee.cpp | 49 unsigned seqCount = length(multiFasta); in _loadSequences() local
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_sequence/ |
| H A D | AnnotatedDNAViewTasks.cpp | 163 int seqCount = 0; in showAlphabetWarning() local
|