| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | al_iterator.c | 78 uint32_t seq_pos; /* position on the sequence, as the reference sees it */ member
392 INSDC_coord_zero *seq_pos ) in AlignmentIteratorState()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
| H A D | alnmap.cpp | 400 CAlnMap::GetRawSeg(TNumrow row, TSeqPos seq_pos, in GetRawSeg()
527 TSignedSeqPos CAlnMap::GetAlnPosFromSeqPos(TNumrow row, TSeqPos seq_pos, in GetAlnPosFromSeqPos()
686 TNumrow row, TSeqPos seq_pos, in GetSeqPosFromSeqPos()
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| H A D | sparse_aln.cpp | 374 TSeqPos seq_pos, in GetAlnPosFromSeqPos()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/ |
| H A D | alnmap.cpp | 400 CAlnMap::GetRawSeg(TNumrow row, TSeqPos seq_pos, in GetRawSeg()
527 TSignedSeqPos CAlnMap::GetAlnPosFromSeqPos(TNumrow row, TSeqPos seq_pos, in GetAlnPosFromSeqPos()
686 TNumrow row, TSeqPos seq_pos, in GetSeqPosFromSeqPos()
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| H A D | sparse_aln.cpp | 374 TSeqPos seq_pos, in GetAlnPosFromSeqPos()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/alnmgr/ |
| H A D | sparse_aln.hpp | 251 TSignedSeqPos seq_pos, in NativeSeqPosToAlnPos()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/alnmgr/ |
| H A D | sparse_aln.hpp | 251 TSignedSeqPos seq_pos, in NativeSeqPosToAlnPos()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
| H A D | objcoords.cpp | 466 TSignedSeqPos& seq_pos, in x_CalculateUTRAdjustments()
543 TSeqPos seq_pos; in x_GetCCoordinate() local
1069 string seq_before, seq_pos, seq_after; in x_GetSequence() local
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/Utils/ |
| H A D | ct2db.c | 144 unsigned int seq_pos = 0; in read_ct_file() local
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
| H A D | RNAsnoop.c | 845 int seq_pos; in read_rnaup() local
929 int seq_pos; in read_plfold_i() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
| H A D | ref_walker.h | 77 INSDC_coord_zero seq_pos; member
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| H A D | cg_tools.c | 583 … int32_t seq_pos = 0; /** seq_pos is tracked roughly - with every extraction from seqOp **/ in CombineCIGAR() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | validerror_format.cpp | 232 size_t seq_pos = NStr::Find(pos_str, " of "); in x_FormatConsensusSpliceForSubmitterReport() local
243 size_t seq_pos = NStr::Find(pos_str, " of "); in x_FormatConsensusSpliceForSubmitterReport() local
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| /dports/biology/gffread/gffread-0.12.7/gclib/ |
| H A D | GFastaFile.h | 668 unsigned int seq_pos; variable
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| /dports/graphics/inkscape/inkscape-1.1_2021-05-24_c4e8f9ed74/src/3rdparty/2geom/src/2geom/ |
| H A D | path.cpp | 891 Sequence::iterator seq_pos(seq_iter(pos)); in insert() local
900 Sequence::iterator seq_pos(seq_iter(pos)); in erase() local
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| /dports/math/lib2geom/lib2geom-1.1/src/2geom/ |
| H A D | path.cpp | 891 Sequence::iterator seq_pos(seq_iter(pos)); in insert() local
900 Sequence::iterator seq_pos(seq_iter(pos)); in erase() local
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | alignval.c | 2444 Int4 row, Int4 seq_pos) in ReadFromAlignmentSample()
2512 Int4 aln_pos, seq_pos, k; in GetAlignmentColumnPercentIdentities() local
2674 Int4 aln_pos, seq_pos, tmp; in AlignmentPercentIdentityEx() local
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| H A D | codon.c | 44 Int4 d_start, seq_pos; in aa_to_codon() local
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| H A D | acerdapi.c | 706 Int4 i = 0, tiling_pos = offset, seq_pos = 0, diff = 0; in GetTransitionsFromGapInfo() local
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | reference.cpp | 256 TIndexOffU seq_pos = seq_poss[i]; in BitPairReference() local
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| /dports/www/elinks/elinks-0.11.7/src/terminal/ |
| H A D | screen.c | 469 int seq_pos = 0; in add_char_color() local
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| /dports/biology/seqan1/seqan-1.3.1/seqan/find_motif/ |
| H A D | find_motif_epatternbranching.h | 530 int seq_pos = 0; in bestNeighbors() local
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| H A D | em_algorithm.h | 654 TType seq_pos = m-(seq_end-seq_iter); in _computeEStep() local
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| /dports/net/reaver/reaver-wps-fork-t6x-1.6.6/src/tls/ |
| H A D | x509v3.c | 302 const u8 *pos, *end, *set_pos, *set_end, *seq_pos, *seq_end; in x509_parse_name() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | ref_iterator.c | 789 INSDC_coord_zero *seq_pos ) in ReferenceIteratorState()
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