| /dports/biology/vsearch/vsearch-2.17.1/src/ |
| H A D | dbhash.cc | 123 uint64_t seqlen, in dbhash_search_first()
158 uint64_t seqlen = info->seqlen; in dbhash_search_next() local
182 void dbhash_add(char * seq, uint64_t seqlen, uint64_t seqno) in dbhash_add()
201 uint64_t seqlen = db_getsequencelen(seqno); in dbhash_add_one() local
214 uint64_t seqlen = db_getsequencelen(seqno); in dbhash_add_all() local
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| H A D | util.cc | 327 void get_hex_seq_digest_sha1(char * hex, char * seq, int seqlen) in get_hex_seq_digest_sha1()
350 void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen) in get_hex_seq_digest_md5()
374 void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen) in fprint_seq_digest_sha1()
381 void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen) in fprint_seq_digest_md5()
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| H A D | unique.cc | 142 int seqlen, in unique_count_bitmap()
226 int seqlen, in unique_count_hash()
318 int seqlen, in unique_count()
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| /dports/lang/v8/v8-9.6.180.12/tools/ |
| H A D | regexp-sequences.py | 19 def parse(file, seqlen): argument
50 def print_most_common(d, seqlen, total): argument
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/v8/tools/ |
| H A D | regexp-sequences.py | 19 def parse(file, seqlen): argument
50 def print_most_common(d, seqlen, total): argument
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/v8/tools/ |
| H A D | regexp-sequences.py | 19 def parse(file, seqlen): argument
50 def print_most_common(d, seqlen, total): argument
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| /dports/biology/pyfasta/pyfasta-0.5.2/tests/ |
| H A D | bench.py | 14 def make_long_fasta(filename="t.fasta", nrecs=2500, seqlen=SEQLEN): argument
25 def read(f, nreads=40000, seqlen=SEQLEN): argument
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| /dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
| H A D | pavesi.c | 105 IntEncodeSeq (char *intseq, char *seq, int seqlen) in IntEncodeSeq()
125 GetBbox (float *score, int *seqidx, char *iseq, int seqlen, in GetBbox()
225 GetBestABox (TRNA_TYPE *tRNA, char *seq, char *iseq, int seqlen, in GetBestABox()
340 GetBestTrxTerm (TRNA_TYPE *tRNA, char *seq, int seqlen, in GetBestTrxTerm()
435 Get_tRNA_stats (TRNA_TYPE *tRNA, char *seq, int seqlen, int strand) in Get_tRNA_stats()
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| /dports/biology/rainbow/rainbow_2.0.4/ |
| H A D | dna.h | 107 #define beg_seq2kmers(seq, seqlen, ksize, kmask, kmer, idx) { \ argument
114 #define beg_seq2revkmers(seq, seqlen, ksize, kmask, kmer, idx) { \ argument
146 static inline void seq2bits(uint64_t *bits, uint64_t bitoff, char *seq, uint32_t seqlen){ in seq2bits()
155 static inline void revseq2bits(uint64_t *bits, uint64_t bitoff, char *seq, uint32_t seqlen){ in revseq2bits()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/psipred/src/ |
| H A D | seq2mtx.cpp | 78 int seq2mtx(const char* seq, int seqlen, const char* outFileName) in seq2mtx()
114 int seq2mtx( const char* seq, int seqlen, QTemporaryFile* tmpFile ) in seq2mtx()
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| H A D | sspred_hmulti.h | 17 int seqlen, nprof; variable
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| /dports/biology/scrm/scrm-1.7.4/tests/manualtests/LD/cluster/ |
| H A D | macs_process.py | 5 seqlen = float(sys.argv[2]) variable
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| /dports/lang/sdcc/sdcc-4.0.0/device/lib/ |
| H A D | mbtowc.c | 34 unsigned char seqlen, i; in mbtowc() local
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| H A D | mbrtowc.c | 35 unsigned char seqlen; in mbrtowc() local
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| /dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
| H A D | embpatlist.c | 273 ajint seqlen; in embPatternRegexSearch() local
404 ajint seqlen; in embPatternRegexSearchAll() local
546 ajint seqlen; in embPatternSeqSearch() local
692 ajint seqlen; in embPatternSeqSearchAll() local
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| /dports/math/gnuplot-lite/gnuplot-5.4.1/src/ |
| H A D | readline.c | 513 int seqlen = 0; in backspace() local
537 int seqlen = 1; in backspace() local
564 int i, seqlen; in step_forward() local
589 int seqlen = char_seqlen(); in delete_forward() local
606 int seqlen = backspace(); in delete_backward() local
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| /dports/math/gnuplot/gnuplot-5.4.1/src/ |
| H A D | readline.c | 513 int seqlen = 0; in backspace() local
537 int seqlen = 1; in backspace() local
564 int i, seqlen; in step_forward() local
589 int seqlen = char_seqlen(); in delete_forward() local
606 int seqlen = backspace(); in delete_backward() local
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| /dports/math/gnuplot-tex-extras/gnuplot-5.2.8/src/ |
| H A D | readline.c | 505 int seqlen = 0; in backspace() local
529 int seqlen = 1; in backspace() local
556 int i, seqlen; in step_forward() local
581 int seqlen = char_seqlen(); in delete_forward() local
598 int seqlen = backspace(); in delete_backward() local
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| /dports/biology/stringtie/stringtie-2.1.1/gclib/ |
| H A D | GFastaIndex.cpp | 11 void GFastaIndex::addRecord(const char* seqname, uint seqlen, off_t foffs, int llen, int llen_full)… in addRecord()
79 uint seqlen=0; in buildIndex() local
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| /dports/biology/libgff/libgff-2.0.0/src/ |
| H A D | GFastaIndex.cpp | 11 void GFastaIndex::addRecord(const char* seqname, uint seqlen, off_t foffs, int llen, int llen_full)… in addRecord()
79 uint seqlen=0; in buildIndex() local
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| /dports/biology/gffread/gffread-0.12.7/gclib/ |
| H A D | GFastaIndex.cpp | 11 void GFastaIndex::addRecord(const char* seqname, uint seqlen, off_t foffs, int llen, int llen_full)… in addRecord()
79 uint seqlen=0; in buildIndex() local
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| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | GFastaIndex.cpp | 11 void GFastaIndex::addRecord(const char* seqname, uint seqlen, off_t foffs, int llen, int llen_full)… in addRecord()
78 uint seqlen=0; in buildIndex() local
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | simple.c | 162 static ByteStorePtr ConvertToIupac (AsnTypePtr atp, ByteStorePtr bsp, Int4 seqlen) in ConvertToIupac()
384 Int4 seqlen; in SimpleSeqPrint() local
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| /dports/lang/sdcc/sdcc-4.0.0/device/lib/pic14/libc/ |
| H A D | mbrtowc.c | 38 unsigned char seqlen; in mbrtowc() local
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| /dports/science/pybrain/pybrain-0.3.3/pybrain/structure/networks/ |
| H A D | bidirectional.py | 32 seqlen = None variable in BidirectionalNetwork
|