/dports/devel/gitlist/gitlist/vendor/phpunit/phpunit-mock-objects/src/Framework/MockObject/Matcher/ |
H A D | InvokedAtIndex.php | 28 protected $sequenceIndex; variable in PHPUnit_Framework_MockObject_Matcher_InvokedAtIndex 38 public function __construct($sequenceIndex)
|
/dports/devel/php-libawl/awl-827fbfed7dab0ca339998ca6cdcffb328246d83b/vendor/phpunit/phpunit-mock-objects/PHPUnit/Framework/MockObject/Matcher/ |
H A D | InvokedAtIndex.php | 68 protected $sequenceIndex; variable in PHPUnit_Framework_MockObject_Matcher_InvokedAtIndex 78 public function __construct($sequenceIndex)
|
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/ |
H A D | preGraphConstruction.c | 74 IDnum sequenceIndex; in orderInsertionMarkers() local 94 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local 195 IDnum sequenceIndex; in countPreNodes() local 319 IDnum sequenceIndex; in createPreNodes() local 523 IDnum sequenceIndex, in connectPreNodeToTheNext() 541 IDnum sequenceIndex, in chooseNextInternalPreNode() 556 IDnum sequenceIndex, PreGraph * preGraph) in connectAnnotation() 579 IDnum sequenceIndex; in connectPreNodes() local
|
H A D | readSet.c | 449 static void readSolexaFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readSolexaFile() 493 static void readElandFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readElandFile() 548 static void readFastQFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastQFile() 610 static void readFastQGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readFastQGZFile() 670 static void readFastAFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastAFile() 816 static void readMAQGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readMAQGZFile() 862 static void readSAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex) in readSAMFile() 986 static void readBAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex) in readBAMFile() 1161 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local 1400 IDnum sequenceCount, sequenceIndex; in importReadSet() local [all …]
|
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/ |
H A D | preGraphConstruction.c | 144 IDnum sequenceIndex; in orderInsertionMarkers() local 167 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local 268 IDnum sequenceIndex; in countPreNodes() local 392 IDnum sequenceIndex; in createPreNodes() local 603 IDnum sequenceIndex, in connectPreNodeToTheNext() 633 IDnum sequenceIndex, in chooseNextInternalPreNode() 647 IDnum sequenceIndex, boolean isReference, in connectAnnotation() 669 IDnum sequenceIndex, in reConnectAnnotation() 708 IDnum sequenceIndex; in createPreMarkers() local 792 IDnum sequenceIndex; in connectPreNodes() local
|
H A D | readSet.c | 278 static void readSolexaFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readSolexaFile() 322 static void readElandFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readElandFile() 377 static void readFastQFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastQFile() 439 static void readRawFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readRawFile() 486 static void readFastQGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readFastQGZFile() 546 static void readRawGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readRawGZFile() 719 static void readFastAGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastAGZFile() 789 static void readMAQGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readMAQGZFile() 835 static void readSAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex, Referenc… in readSAMFile() 1405 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local [all …]
|
/dports/biology/velvet/velvet_1.2.10/src/ |
H A D | preGraphConstruction.c | 145 IDnum sequenceIndex; in orderInsertionMarkers() local 168 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local 269 IDnum sequenceIndex; in countPreNodes() local 395 IDnum sequenceIndex; in createPreNodes() local 652 IDnum sequenceIndex, in connectPreNodeToTheNext() 682 IDnum sequenceIndex, in chooseNextInternalPreNode() 696 IDnum sequenceIndex, boolean isReference, in connectAnnotation() 718 IDnum sequenceIndex, in reConnectAnnotation() 757 IDnum sequenceIndex; in createPreMarkers() local 841 IDnum sequenceIndex; in connectPreNodes() local
|
H A D | readSet.c | 361 …void writeSeqName(char*seq_name, SequencesWriter *seqWriteInfo, Category cat, IDnum *sequenceIndex) in writeSeqName() 417 …oid readRawFile(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum * sequenceIndex) in readRawFile() 457 …id readRawGZFile(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex) in readRawGZFile() 671 …quencesWriter *seqWriteInfo, char *filename1, char *filename2, Category cat, IDnum * sequenceIndex) in readFastXPair() 762 static void writeMappedSequence(IDnum * sequenceIndex, Category cat, Category prev_cat, char * prev… in writeMappedSequence() 815 …File(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex, ReferenceC… in readSAMFile() 954 …File(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex, ReferenceC… in readBAMFile() 1190 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local 1531 IDnum sequenceCount, sequenceIndex; in importReadSet() local
|
/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/cramtools/ref/ |
H A D | ReferenceRegion.java | 36 public ReferenceRegion(byte[] bases, int sequenceIndex, String sequenceName, long alignmentStart) { in ReferenceRegion() 48 public static ReferenceRegion wrap(byte[] bases, int sequenceIndex, String sequenceName) { in wrap() 52 …public static ReferenceRegion copyRegion(byte[] bases, int sequenceIndex, String sequenceName, lon… in copyRegion()
|
H A D | ReferenceSequenceFromSeekable.java | 134 int sequenceIndex = 0; in buildIndex() local 170 private final int sequenceIndex; field in ReferenceSequenceFromSeekable.FastaSequenceIndexEntry 173 int sequenceIndex) { in FastaSequenceIndexEntry()
|
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/ |
H A D | SubstitutionLookups.h | 51 le_uint16 sequenceIndex; member
|
H A D | SubstitutionLookups.cpp | 66 le_uint16 sequenceIndex = SWAPW(substLookupRecordArray[subst].sequenceIndex); in applySubstitutionLookups() local
|
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/ |
H A D | SubstitutionLookups.h | 51 le_uint16 sequenceIndex; member
|
H A D | SubstitutionLookups.cpp | 66 le_uint16 sequenceIndex = SWAPW(substLookupRecordArray[subst].sequenceIndex); in applySubstitutionLookups() local
|
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/ |
H A D | NonDMultilevelStochCollocation.hpp | 93 size_t sequenceIndex; member in Dakota::NonDMultilevelStochCollocation
|
H A D | NonDMultilevelFunctionTrain.hpp | 132 size_t sequenceIndex; member in Dakota::NonDMultilevelFunctionTrain
|
H A D | NonDMultilevelPolynomialChaos.hpp | 144 size_t sequenceIndex; member in Dakota::NonDMultilevelPolynomialChaos
|
/dports/devel/kf5-kio/kio-5.89.0/src/widgets/ |
H A D | thumbsequencecreator.cpp | 17 float ThumbSequenceCreator::sequenceIndex() const in sequenceIndex() function in ThumbSequenceCreator
|
/dports/biology/lamarc/lamarc-2.1.8/src/convParse/ |
H A D | gc_parser.cpp | 113 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataInterleaved() local 129 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataInterleaved() local 143 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataNonInterleaved() local
|
/dports/games/libretro-scummvm/scummvm-7b1e929/engines/lastexpress/fight/ |
H A D | fighter.cpp | 75 void Fighter::setSequenceAndDraw(uint32 sequenceIndex, FightSequenceType type) { in setSequenceAndDraw()
|
/dports/games/scummvm/scummvm-2.5.1/engines/lastexpress/fight/ |
H A D | fighter.cpp | 75 void Fighter::setSequenceAndDraw(uint32 sequenceIndex, FightSequenceType type) { in setSequenceAndDraw()
|
/dports/biology/ugene/ugene-40.1/src/plugins/dna_export/src/ |
H A D | DNASequenceGenerator.cpp | 294 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in onGenerateTaskFinished() local 320 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in addSequencesToMsaDoc() local 339 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in addSequencesToSeqDoc() local
|
/dports/textproc/fop/fop-2.6/fop-core/src/main/java/org/apache/fop/complexscripts/fonts/ |
H A D | GlyphSubstitutionSubtable.java | 87 …equence substitute(GlyphSubstitutionState ss, GlyphSubstitutionSubtable[] sta, int sequenceIndex) { in substitute()
|
H A D | GlyphPositioningSubtable.java | 86 …nal boolean position(GlyphPositioningState ps, GlyphPositioningSubtable[] sta, int sequenceIndex) { in position()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/ |
H A D | SequenceSelectorWidgetController.cpp | 111 const int sequenceIndex = completer->getLastChosenItemIndex(); in sl_seqLineEditEditingFinished() local
|