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Searched defs:sequenceIndex (Results 1 – 25 of 108) sorted by relevance

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/dports/devel/gitlist/gitlist/vendor/phpunit/phpunit-mock-objects/src/Framework/MockObject/Matcher/
H A DInvokedAtIndex.php28 protected $sequenceIndex; variable in PHPUnit_Framework_MockObject_Matcher_InvokedAtIndex
38 public function __construct($sequenceIndex)
/dports/devel/php-libawl/awl-827fbfed7dab0ca339998ca6cdcffb328246d83b/vendor/phpunit/phpunit-mock-objects/PHPUnit/Framework/MockObject/Matcher/
H A DInvokedAtIndex.php68 protected $sequenceIndex; variable in PHPUnit_Framework_MockObject_Matcher_InvokedAtIndex
78 public function __construct($sequenceIndex)
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/
H A DpreGraphConstruction.c74 IDnum sequenceIndex; in orderInsertionMarkers() local
94 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local
195 IDnum sequenceIndex; in countPreNodes() local
319 IDnum sequenceIndex; in createPreNodes() local
523 IDnum sequenceIndex, in connectPreNodeToTheNext()
541 IDnum sequenceIndex, in chooseNextInternalPreNode()
556 IDnum sequenceIndex, PreGraph * preGraph) in connectAnnotation()
579 IDnum sequenceIndex; in connectPreNodes() local
H A DreadSet.c449 static void readSolexaFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readSolexaFile()
493 static void readElandFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readElandFile()
548 static void readFastQFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastQFile()
610 static void readFastQGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readFastQGZFile()
670 static void readFastAFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastAFile()
816 static void readMAQGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readMAQGZFile()
862 static void readSAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex) in readSAMFile()
986 static void readBAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex) in readBAMFile()
1161 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local
1400 IDnum sequenceCount, sequenceIndex; in importReadSet() local
[all …]
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/
H A DpreGraphConstruction.c144 IDnum sequenceIndex; in orderInsertionMarkers() local
167 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local
268 IDnum sequenceIndex; in countPreNodes() local
392 IDnum sequenceIndex; in createPreNodes() local
603 IDnum sequenceIndex, in connectPreNodeToTheNext()
633 IDnum sequenceIndex, in chooseNextInternalPreNode()
647 IDnum sequenceIndex, boolean isReference, in connectAnnotation()
669 IDnum sequenceIndex, in reConnectAnnotation()
708 IDnum sequenceIndex; in createPreMarkers() local
792 IDnum sequenceIndex; in connectPreNodes() local
H A DreadSet.c278 static void readSolexaFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readSolexaFile()
322 static void readElandFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readElandFile()
377 static void readFastQFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastQFile()
439 static void readRawFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readRawFile()
486 static void readFastQGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readFastQGZFile()
546 static void readRawGZFile(FILE * outfile, char *filename, Category cat, IDnum *sequenceIndex) in readRawGZFile()
719 static void readFastAGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readFastAGZFile()
789 static void readMAQGZFile(FILE* outfile, char *filename, Category cat, IDnum * sequenceIndex) in readMAQGZFile()
835 static void readSAMFile(FILE *outfile, char *filename, Category cat, IDnum *sequenceIndex, Referenc… in readSAMFile()
1405 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local
[all …]
/dports/biology/velvet/velvet_1.2.10/src/
H A DpreGraphConstruction.c145 IDnum sequenceIndex; in orderInsertionMarkers() local
168 IDnum sequenceIndex, sequenceIndex2; in setInsertionMarkers() local
269 IDnum sequenceIndex; in countPreNodes() local
395 IDnum sequenceIndex; in createPreNodes() local
652 IDnum sequenceIndex, in connectPreNodeToTheNext()
682 IDnum sequenceIndex, in chooseNextInternalPreNode()
696 IDnum sequenceIndex, boolean isReference, in connectAnnotation()
718 IDnum sequenceIndex, in reConnectAnnotation()
757 IDnum sequenceIndex; in createPreMarkers() local
841 IDnum sequenceIndex; in connectPreNodes() local
H A DreadSet.c361 …void writeSeqName(char*seq_name, SequencesWriter *seqWriteInfo, Category cat, IDnum *sequenceIndex) in writeSeqName()
417 …oid readRawFile(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum * sequenceIndex) in readRawFile()
457 …id readRawGZFile(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex) in readRawGZFile()
671 …quencesWriter *seqWriteInfo, char *filename1, char *filename2, Category cat, IDnum * sequenceIndex) in readFastXPair()
762 static void writeMappedSequence(IDnum * sequenceIndex, Category cat, Category prev_cat, char * prev… in writeMappedSequence()
815 …File(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex, ReferenceC… in readSAMFile()
954 …File(SequencesWriter *seqWriteInfo, char *filename, Category cat, IDnum *sequenceIndex, ReferenceC… in readBAMFile()
1190 IDnum sequenceIndex = 1; in parseDataAndReadFiles() local
1531 IDnum sequenceCount, sequenceIndex; in importReadSet() local
/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/cramtools/ref/
H A DReferenceRegion.java36 public ReferenceRegion(byte[] bases, int sequenceIndex, String sequenceName, long alignmentStart) { in ReferenceRegion()
48 public static ReferenceRegion wrap(byte[] bases, int sequenceIndex, String sequenceName) { in wrap()
52 …public static ReferenceRegion copyRegion(byte[] bases, int sequenceIndex, String sequenceName, lon… in copyRegion()
H A DReferenceSequenceFromSeekable.java134 int sequenceIndex = 0; in buildIndex() local
170 private final int sequenceIndex; field in ReferenceSequenceFromSeekable.FastaSequenceIndexEntry
173 int sequenceIndex) { in FastaSequenceIndexEntry()
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/
H A DSubstitutionLookups.h51 le_uint16 sequenceIndex; member
H A DSubstitutionLookups.cpp66 le_uint16 sequenceIndex = SWAPW(substLookupRecordArray[subst].sequenceIndex); in applySubstitutionLookups() local
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/native/sun/font/layout/
H A DSubstitutionLookups.h51 le_uint16 sequenceIndex; member
H A DSubstitutionLookups.cpp66 le_uint16 sequenceIndex = SWAPW(substLookupRecordArray[subst].sequenceIndex); in applySubstitutionLookups() local
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/
H A DNonDMultilevelStochCollocation.hpp93 size_t sequenceIndex; member in Dakota::NonDMultilevelStochCollocation
H A DNonDMultilevelFunctionTrain.hpp132 size_t sequenceIndex; member in Dakota::NonDMultilevelFunctionTrain
H A DNonDMultilevelPolynomialChaos.hpp144 size_t sequenceIndex; member in Dakota::NonDMultilevelPolynomialChaos
/dports/devel/kf5-kio/kio-5.89.0/src/widgets/
H A Dthumbsequencecreator.cpp17 float ThumbSequenceCreator::sequenceIndex() const in sequenceIndex() function in ThumbSequenceCreator
/dports/biology/lamarc/lamarc-2.1.8/src/convParse/
H A Dgc_parser.cpp113 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataInterleaved() local
129 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataInterleaved() local
143 for(size_t sequenceIndex = 0; sequenceIndex < expectedNumSequences; sequenceIndex++) in FillDataNonInterleaved() local
/dports/games/libretro-scummvm/scummvm-7b1e929/engines/lastexpress/fight/
H A Dfighter.cpp75 void Fighter::setSequenceAndDraw(uint32 sequenceIndex, FightSequenceType type) { in setSequenceAndDraw()
/dports/games/scummvm/scummvm-2.5.1/engines/lastexpress/fight/
H A Dfighter.cpp75 void Fighter::setSequenceAndDraw(uint32 sequenceIndex, FightSequenceType type) { in setSequenceAndDraw()
/dports/biology/ugene/ugene-40.1/src/plugins/dna_export/src/
H A DDNASequenceGenerator.cpp294 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in onGenerateTaskFinished() local
320 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in addSequencesToMsaDoc() local
339 …for (int sequenceIndex = 0, totalSeqCount = seqs.size(); sequenceIndex < totalSeqCount; sequenceIn… in addSequencesToSeqDoc() local
/dports/textproc/fop/fop-2.6/fop-core/src/main/java/org/apache/fop/complexscripts/fonts/
H A DGlyphSubstitutionSubtable.java87 …equence substitute(GlyphSubstitutionState ss, GlyphSubstitutionSubtable[] sta, int sequenceIndex) { in substitute()
H A DGlyphPositioningSubtable.java86 …nal boolean position(GlyphPositioningState ps, GlyphPositioningSubtable[] sta, int sequenceIndex) { in position()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/
H A DSequenceSelectorWidgetController.cpp111 const int sequenceIndex = completer->getLastChosenItemIndex(); in sl_seqLineEditEditingFinished() local

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