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Searched defs:slp2 (Results 1 – 25 of 53) sorted by relevance

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/dports/devel/valgrind-lts/valgrind-dragonfly-dragonfly/helgrind/tests/
H A Dbar_bad.c38 pthread_t thr1, thr2, slp1, slp2, ext1; in main() local
/dports/devel/valgrind/valgrind-dragonfly-dragonfly/helgrind/tests/
H A Dbar_bad.c38 pthread_t thr1, thr2, slp1, slp2, ext1; in main() local
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dsalign.c149 static GlobalBandStructPtr CC_CreatBandStruct(SeqLocPtr slp1, SeqLocPtr slp2, MashPtr msp) in CC_CreatBandStruct()
168 static SeqAlignPtr BandAlignTwoSeqLocsFunc (SeqLocPtr slp1, SeqLocPtr slp2, MashPtr msp) in BandAlignTwoSeqLocsFunc()
215 static SeqAlignPtr BandAlignTwoSeqLocs (SeqLocPtr slp1, SeqLocPtr slp2, MashPtr msp) in BandAlignTwoSeqLocs()
529 static SeqAlignPtr BlastTwoSeqLocs (SeqLocPtr slp1, SeqLocPtr slp2, Boolean is_prot, MashPtr msp) in BlastTwoSeqLocs()
803 static SeqAlignPtr align_extrem (SeqAlignPtr salp, SeqLocPtr slp1, SeqLocPtr slp2, MashPtr msp) in align_extrem()
948 SeqLocPtr slp1, slp2; in align_btwhits() local
1440 static SeqAlignPtr BlastBandAlignTwoSeqLocs (SeqLocPtr slp1, SeqLocPtr slp2, SeqAlignPtr salp, Bool… in BlastBandAlignTwoSeqLocs()
1504 static SeqAlignPtr AlignAnyway (SeqLocPtr slp1, SeqLocPtr slp2, Boolean is_prot, MashPtr msp, Boole… in AlignAnyway()
1545 static SeqAlignPtr AlignmRNA2genomicToSeqAlign (SeqLocPtr slp1, SeqLocPtr slp2, SeqAlignPtr salpbla… in AlignmRNA2genomicToSeqAlign()
1778 slp2 = NULL; in AlignmRNA2genomic() local
H A Durksigu.c112 SeqLocPtr slp1, slp2; in FilterSigSeq() local
H A Durkbias.c246 SeqLocPtr slp1, slp2; in SeqLocCompProc() local
306 SeqLocPtr slp1, slp2, slp = NULL; in RemoveInternalOrfs() local
H A Dbandalgn.c868 NLM_EXTERN GlobalBandStructPtr CreatBandStruct(SeqLocPtr slp1, SeqLocPtr slp2, Int4Ptr PNTR W, Bool… in CreatBandStruct()
934 …Blast(PSUGapOptionsPtr opt, Boolean is_prot, Int2 type, Int2 width, SeqLocPtr slp1, SeqLocPtr slp2) in SetLowUpFromBlast()
1084 NLM_EXTERN SeqAlignPtr GlobalBandByLoc(GlobalBandStructPtr gbsp, SeqLocPtr slp1, SeqLocPtr slp2, B… in GlobalBandByLoc()
H A Ddotseq.c1919 static DOTMainDataPtr DOT_InitMainInfobyLoc (DOTMainDataPtr mip, SeqLocPtr slp1, SeqLocPtr slp2, In… in DOT_InitMainInfobyLoc()
2004 SeqAlignPtr DOT_SPI_FindBestAlnByDotPlot(SeqLocPtr slp1, SeqLocPtr slp2, Int4 wordsize, Int4 num_hi… in DOT_SPI_FindBestAlnByDotPlot()
2084 DOTMainDataPtr DOT_CreateAndStorebyLoc (SeqLocPtr slp1, SeqLocPtr slp2, Int4 word_size, Int4 num_hi… in DOT_CreateAndStorebyLoc()
H A Dfalign.c307 SeqAlignPtr falign(SeqLocPtr slp1, SeqLocPtr slp2, CharPtr A, CharPtr B, Int4 w, Int4 k, Int4 r, In… in falign()
1100 void global(fragment PNTR bf, fragment PNTR ef, Int4 gs, SeqLocPtr slp1, SeqLocPtr slp2, SeqAlignP… in global()
1684 SeqAlignPtr printS(kbclass PNTR sp, SeqLocPtr slp1, SeqLocPtr slp2, SeqAlignPtr head) in printS()
1759 SeqAlignPtr class_print(SeqLocPtr slp1, SeqLocPtr slp2) in class_print()
2908 DenseDiagPtr frag_print(fragment PNTR f, SeqLocPtr slp1, SeqLocPtr slp2, DenseDiagPtr head) in frag_print()
H A Dactutils.c1990 static SeqAlignPtr ACT_FindBestAlnByDotPlot(SeqLocPtr slp1, SeqLocPtr slp2) in ACT_FindBestAlnByDotPlot()
2104 SeqLocPtr slp2; in ACT_FindPiece() local
3085 static SeqAlignPtr LIBCALLBACK GetOldBlastAlignmentPiece (SeqLocPtr slp1, SeqLocPtr slp2) in GetOldBlastAlignmentPiece()
H A Dsalptool.c854 static Boolean is_bad_blast_alignment(SeqAlignPtr align, SeqLocPtr slp1, SeqLocPtr slp2, Int4 min_a… in is_bad_blast_alignment()
1083 static SeqAlignPtr SeqAlignConsistentDiagFilter(SeqAlignPtr align,SeqLocPtr slp1, SeqLocPtr slp2, in SeqAlignConsistentDiagFilter()
H A Dspidey.c496 SeqLocPtr slp2; in SPI_AlnSinglemRNAToGen() local
2761 SeqLocPtr slp2; in SPI_AlnSinglemRNAToPieces() local
4085 SeqLocPtr slp2; in SPI_ConnectAln() local
4461 SeqLocPtr slp2; in SPI_FillInIntron() local
4660 SeqLocPtr slp2; in SPI_FindPiece() local
6305 SeqLocPtr slp2; in SPI_FillInLastmRNAHoles() local
6433 static SeqAlignPtr SPI_FindBestAlnByDotPlot(SeqLocPtr slp1, SeqLocPtr slp2) in SPI_FindBestAlnByDotPlot()
H A Dvecscrn.c454 SeqLocPtr slp1, slp2; in MySeqLocSortByStartPosition() local
H A Dgapxdrop.c2119 SeqLocPtr slp, slp1, slp2; in GXEMakeSeqAlign() local
2583 SeqLocPtr slp, slp1, slp2; in OOFGapXEditBlockToSeqAlign() local
H A Durkcnsrt.c1498 SeqLocPtr slp1, slp2; in ConKovCDSGlobalNtFreqs() local
H A Dsimutil.c1415 SeqAlignPtr ConvertEditScript(EditScriptPtr esp, SeqLocPtr slp1, SeqLocPtr slp2, Int4 offset_1, Int… in ConvertEditScript()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Ddotmain.c165 …ignTwoSeqsAndDisplay(BioseqPtr bsp1, BioseqPtr bsp2, SeqLocPtr slp1, SeqLocPtr slp2, Int4 word_siz… in DOT_AlignTwoSeqsAndDisplay()
203 static SeqAlignPtr DOT_RunBlast2Seqs(BioseqPtr bsp1, BioseqPtr bsp2, SeqLocPtr slp1, SeqLocPtr slp2… in DOT_RunBlast2Seqs()
269 SeqLocPtr slp1=NULL, slp2=NULL; in DOT_RunRequest() local
376 SeqLocPtr slp1=NULL, slp2=NULL; in DOT_OpenAcceptProc() local
499 SeqLocPtr slp1=NULL, slp2=NULL; in DOT_AcceptNetworkProc() local
H A Dbl2seq.c647 BL2SEQ_MakeSeqLoc(const BioseqPtr bsp1, const BioseqPtr bsp2, SeqLocPtr *slp1, SeqLocPtr *slp2, Uin… in BL2SEQ_MakeSeqLoc()
805 SeqLocPtr slp1, slp2; /* Used for actual search. */ in Main_new() local
1113 SeqLocPtr slp1=NULL, slp2=NULL; in Main_old() local
H A Dasnmacro.c99 static SeqAlignPtr LIBCALLBACK GetSeqAlignPiece (SeqLocPtr slp1, SeqLocPtr slp2) in GetSeqAlignPiece()
/dports/devel/gettext-tools/gettext-0.21/gettext-tools/src/
H A Dmsgl-equal.c118 string_list_equal (const string_list_ty *slp1, const string_list_ty *slp2) in string_list_equal()
/dports/devel/gettext-runtime/gettext-0.21/gettext-tools/src/
H A Dmsgl-equal.c118 string_list_equal (const string_list_ty *slp1, const string_list_ty *slp2) in string_list_equal()
/dports/devel/gettext-po-mode/gettext-0.21/gettext-tools/src/
H A Dmsgl-equal.c118 string_list_equal (const string_list_ty *slp1, const string_list_ty *slp2) in string_list_equal()
/dports/devel/libtextstyle/gettext-0.21/gettext-tools/src/
H A Dmsgl-equal.c118 string_list_equal (const string_list_ty *slp1, const string_list_ty *slp2) in string_list_equal()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsalutil.c1480 SeqLocPtr slp1, slp2; in SeqLocListMatch() local
1587 SeqLocPtr slp, slp2; in SelStructCpy() local
1705 SeqLocPtr slp1, slp2; in is_samepos() local
1774 NLM_EXTERN Boolean include_ssp (SeqLocPtr slp1, SeqLocPtr slp2) in include_ssp()
1782 NLM_EXTERN Int4 overlapp_startssp (SeqLocPtr slp1, SeqLocPtr slp2) in overlapp_startssp()
1791 NLM_EXTERN Boolean overlapp_ssp (SeqLocPtr slp1, SeqLocPtr slp2) in overlapp_ssp()
1799 NLM_EXTERN Boolean precede_ssp (SeqLocPtr slp1, SeqLocPtr slp2) in precede_ssp()
1806 NLM_EXTERN Boolean succeed_ssp (SeqLocPtr slp1, SeqLocPtr slp2) in succeed_ssp()
1992 SeqLocPtr slp, slp2; in SelEdStructCpy() local
H A Dneedleman.c277 NLM_EXTERN SeqAlignPtr LIBCALL NeedlemanWunschQuadraticByLoc(SeqLocPtr slp1,SeqLocPtr slp2, Int4 **… in NeedlemanWunschQuadraticByLoc()
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_seqalign.c623 SeqLocPtr slp, slp1, slp2; in s_GapMakeSeqAlign() local
840 SeqLocPtr slp, slp1, slp2; in OOFBlastHSPToSeqAlign() local

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