| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | SeqsetUtils.java | 46 Hashtable sqinfo = new Hashtable(); in SeqCharacterHash() local
85 public static boolean SeqCharacterUnhash(SequenceI sq, Hashtable sqinfo) in SeqCharacterUnhash()
99 …public static boolean SeqCharacterUnhash(SequenceI sq, Hashtable sqinfo, boolean excludeLimits,boo… in SeqCharacterUnhash()
253 Hashtable sqinfo = (Hashtable) map.get(key); in deuniquify() local
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| /dports/biology/wise/wise2.4.1/src/HMMer2/ |
| H A D | hmmemit.c | 168 SQINFO *sqinfo; /* info about sequences (name/desc) */ in main() local
212 SQINFO sqinfo; /* info about sequence (name/len) */ in main() local
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| H A D | hmmpfam.c | 85 SQINFO sqinfo; /* optional info for seq */ in main() local
426 struct plan7_s *hmm, char *dsq, SQINFO *sqinfo, in record_domains()
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| H A D | hmmsearch.c | 82 SQINFO sqinfo; /* optional info for seq */ in main() local
465 struct plan7_s *hmm, char *dsq, SQINFO *sqinfo, in record_domains()
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| H A D | sqio.c | 59 FreeSequence(char *seq, SQINFO *sqinfo) in FreeSequence()
67 SetSeqinfoString(SQINFO *sqinfo, char *sptr, int flag) in SetSeqinfoString()
896 ReadSeq(SQFILE *V, int format, char **ret_seq, SQINFO *sqinfo) in ReadSeq()
1259 WriteSeq(FILE *outf, int outform, char *seq, SQINFO *sqinfo) in WriteSeq()
1480 SQINFO *sqinfo; /* array of sequence optional info */ in ReadMultipleRseqs() local
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| H A D | hmmalign.c | 61 SQINFO *sqinfo; /* info associated with sequences */ in main() local
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| H A D | alignio.c | 111 SQINFO sqinfo; /* info for new sequence */ in ReadAlignedFASTA() local
479 RandomAlignment(char **rseqs, SQINFO *sqinfo, int nseq, float pop, float pex, in RandomAlignment()
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| /dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
| H A D | revcomp_main.c | 34 SQINFO sqinfo; /* additional sequence info */ in main() local
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| H A D | shuffle_main.c | 45 SQINFO sqinfo; /* additional sequence info */ in main() local
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| H A D | seqstat_main.c | 39 SQINFO sqinfo; /* extra info about sequence */ in main() local
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| H A D | reformat_main.c | 78 SQINFO sqinfo; in main() local
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| H A D | sqio.c | 70 FreeSequence(char *seq, SQINFO *sqinfo) in FreeSequence()
78 SetSeqinfoString(SQINFO *sqinfo, char *sptr, int flag) in SetSeqinfoString()
900 ReadSeq(SQFILE *V, int format, char **ret_seq, SQINFO *sqinfo) in ReadSeq()
1260 WriteSeq(FILE *outf, int outform, char *seq, SQINFO *sqinfo) in WriteSeq()
1509 SQINFO *sqinfo; /* array of sequence optional info */ in ReadMultipleRseqs() local
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| H A D | align_main.c | 48 SQINFO *sqinfo; /* array of info structures */ in main() local
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| H A D | score_main.c | 47 SQINFO sqinfo; /* info about seq */ in main() local
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| H A D | eufind_main.c | 57 SQINFO sqinfo; in main() local
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| H A D | scan_main.c | 57 SQINFO sqinfo; /* info about sequence */ in main() local
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| H A D | train_main.c | 49 SQINFO *sqinfo; /* array of sqinfo structures for rseqs */ in main() local
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| H A D | align.c | 234 SQINFO *sqinfo, in Traces2Alignment()
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| H A D | mpcovels_main.c | 55 static SQINFO *sqinfo; /* array of NYPROC sequence info structures */ variable
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| H A D | alignio.c | 326 RandomAlignment(char **rseqs, SQINFO *sqinfo, int nseq, float pop, float pex, in RandomAlignment()
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| H A D | squid.h | 127 SQINFO *sqinfo; /* name, id, etc. */ member
224 struct seqinfo_s *sqinfo; /* name, id, coord info for each sequence */ member
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| H A D | pavesi.c | 457 Save_tRNA (TRNA_TYPE *tRNA, SQINFO *sqinfo, char *seq, int strand, in Save_tRNA()
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/ |
| H A D | sqio.c | 326 FreeSequence(char *seq, SQINFO *sqinfo) in FreeSequence()
347 SetSeqinfoString(SQINFO *sqinfo, char *sptr, int flag) in SetSeqinfoString()
1075 ReadSeq(SQFILE *V, int format, char **ret_seq, SQINFO *sqinfo)
1640 WriteSeq(FILE *outf, int outform, char *seq, SQINFO *sqinfo)
1851 SQINFO *sqinfo; /* array of sequence optional info */ local
2006 SQINFO *sqinfo; local
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/clustal/ |
| H A D | seq.h | 113 SQINFO *sqinfo; member
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| H A D | seq.c | 327 LogSqInfo(SQINFO *sqinfo) in LogSqInfo()
1220 SQINFO sqinfo; in AddSeq() local
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