Searched defs:target_seqs (Results 1 – 12 of 12) sorted by relevance
| /dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/ |
| H A D | seqio.py | 54 def load_sequences(args, seqtype, target_seqs, target_species, cached_seqs): argument
168 def check_seq_integrity(args, target_seqs, visited_seqs, seq2length, seq2unknown, seq2seq): argument
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| H A D | utils.py | 221 def generate_node_ids(target_seqs, out_seqs): argument
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/task/ |
| H A D | msf.py | 55 def __init__(self, target_seqs, out_seqs, seqtype): argument
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| H A D | merger.py | 232 def dump_tree_debug(msg, taskdir, mtree, ttree, target_seqs, out_seqs): argument
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| /dports/biology/diamond/diamond-2.0.13/src/align/global_ranking/ |
| H A D | table.cpp | 45 const SequenceSet& target_seqs = cfg.target->seqs(); in get_query_hits() local
119 const SequenceSet& target_seqs = cfg.target->seqs(); in get_query_hits_reextend() local
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| /dports/biology/diamond/diamond-2.0.13/src/align/ |
| H A D | alt_hsp.cpp | 109 SequenceSet target_seqs; in recompute_alt_hsps() local
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| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | KmerIndex.cpp | 1379 auto &target_seqs = const_cast<std::vector<std::string>&>(target_seqs_); in loadTranscriptSequences() local
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| /dports/biology/iqtree/IQ-TREE-2.0.6/alignment/ |
| H A D | superalignment.cpp | 925 …veIdenticalSeq(string not_remove, bool keep_two, StrVector &removed_seqs, StrVector &target_seqs) { in removeIdenticalSeq()
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| H A D | alignment.cpp | 311 …moveIdenticalSeq(string not_remove, bool keep_two, StrVector &removed_seqs, StrVector &target_seqs) in removeIdenticalSeq()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blastutl.c | 3464 BLAST_MatrixPtr matrix, SeqLocPtr *target_seqs, Int4 ntargets, in B2SPssmMultipleQueries()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/angle/third_party/vulkan-validation-layers/src/layers/ |
| H A D | core_validation.cpp | 2357 std::unordered_map<const QUEUE_STATE *, uint64_t> target_seqs{{initial_queue, initial_seq}}; in VerifyQueueStateToSeq() local
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| /dports/graphics/vulkan-validation-layers/Vulkan-ValidationLayers-1.2.203/layers/ |
| H A D | core_validation.cpp | 3199 …layer_data::unordered_map<const QUEUE_STATE *, uint64_t> target_seqs{{initial_queue, initial_seq}}; in VerifyQueueStateToSeq() local
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