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Searched defs:ulii (Results 1 – 25 of 40) sorted by relevance

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/dports/biology/plink/plink-ng-79b2df8c/2.0/cindex/src/
H A Dcindex.cpp43 for (uintptr_t ulii = 1; ulii != size; ++ulii) { in CIndex() local
111 for (uintptr_t ulii = 0; ulii != size; ++ulii) { in CIndex() local
119 for (uintptr_t ulii = 1; ulii != size; ++ulii) { in CIndex() local
137 for (uintptr_t ulii = 0; ulii != size; ++ulii) { in CIndex() local
153 for (uintptr_t ulii = 0; ulii != size; ++ulii) { in CIndex() local
208 uintptr_t ulii = cur_word + remainder_bit; in CIndex() local
248 uintptr_t ulii = cur_word + remainder_bit; in CIndex() local
417 for (uintptr_t ulii = 0; ulii != orig_size; ++ulii) { in CIndexWeighted() local
483 for (uintptr_t ulii = 0; ulii != orig_size; ++ulii) { in CIndexWeighted() local
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_calc.c146 uintptr_t ulii; in update_rel_ibc() local
653 uintptr_t ulii; in popcount_xor_1mask_multiword() local
688 uintptr_t ulii; in popcount_xor_2mask_multiword() local
768 uintptr_t ulii; in ibs_test_init_col_buf() local
793 uintptr_t ulii; in fill_psbuf() local
844 uintptr_t ulii; in ibs_test_process_perms() local
917 uintptr_t ulii; in ibs_test_range() local
1027 uintptr_t ulii; in incr_wt_dist_missing() local
1050 uintptr_t ulii; in incr_dists_rm() local
1496 uintptr_t ulii; in incr_dists_rm_inv() local
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H A Dplink_lasso.c98 uintptr_t ulii; in lasso_bigmem() local
547 for (uintptr_t ulii = 0; ulii < cur_block_size; ulii++) { in lasso_lambda() local
564 for (uintptr_t ulii = 0; ulii < cur_block_size; ulii++) { in lasso_lambda() local
674 uintptr_t ulii; in lasso_smallmem() local
1042 uintptr_t ulii; in lasso() local
H A Dplink_common.c3615 uintptr_t ulii; in last_set_bit() local
3629 uintptr_t ulii; in last_clear_bit() local
3650 uintptr_t ulii; in prev_unset_unsafe() local
5414 uintptr_t ulii; in qsort_ext2() local
5921 uintptr_t ulii; in is_monomorphic() local
5969 uintptr_t ulii; in less_than_two_genotypes() local
6288 uintptr_t ulii; in popcount_longs() local
6341 uintptr_t ulii; in popcount2_longs() local
6675 uintptr_t ulii; in popcount_longs_exclude() local
6725 uintptr_t ulii; in popcount_longs_intersect() local
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H A Dplink_set.c291 uintptr_t ulii; in load_range_list() local
828 uintptr_t ulii; in save_set_range() local
1032 uintptr_t ulii; in define_sets() local
2223 uintptr_t ulii; in load_range_list_sortpos() local
2490 uintptr_t ulii; in annotate() local
3290 uintptr_t ulii; in gene_report() local
H A Dplink_cnv.c111 uintptr_t ulii; in cnv_intersect_load() local
496 uintptr_t ulii; in cnv_make_map() local
950 uintptr_t ulii; in plink_cnv() local
H A Dplink_rserve.c58 uintptr_t ulii; in rserve_call() local
H A Dplink_common.h1909 size_t ulii; in fill_ulong_zero() local
1922 size_t ulii; in fill_vvec_zero() local
1934 size_t ulii; in fill_ulong_one() local
1951 size_t ulii; in fill_int_zero() local
1958 size_t ulii; in fill_int_one() local
1965 size_t ulii; in fill_uint_zero() local
1972 size_t ulii; in fill_uint_one() local
1979 size_t ulii; in fill_float_zero() local
1986 size_t ulii; in fill_double_zero() local
H A Dplink_filter.c453 uintptr_t ulii; in filter_attrib() local
685 uintptr_t ulii; in filter_attrib_sample() local
1203 uintptr_t ulii; in load_oblig_missing() local
1626 uintptr_t ulii; in mind_filter() local
2023 uintptr_t ulii; in calc_freqs_and_hwe() local
2530 uintptr_t ulii; in write_missingness_reports() local
H A Dplink_ld.c829 uintptr_t ulii; in ld_prune() local
1532 uintptr_t ulii; in flipscan() local
2142 uintptr_t ulii; in ld_matrix_emitn() local
2228 uintptr_t ulii; in ld_report_matrix() local
2804 uintptr_t ulii; in load_and_split3() local
3804 uintptr_t ulii; in fast_epi_thread() local
4204 uintptr_t ulii; in epi_linear_thread() local
4639 uintptr_t ulii; in epi_logistic_thread() local
5739 uintptr_t ulii; in ld_report_regular() local
6358 uintptr_t ulii; in show_tags() local
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H A Dplink_data.c43 uintptr_t ulii; in sort_item_ids_nx() local
219 uintptr_t ulii; in load_map() local
478 uintptr_t ulii; in load_bim() local
1237 uintptr_t ulii; in load_covars() local
1740 uintptr_t ulii; in write_covars() local
3992 uintptr_t ulii; in oxford_to_bed() local
5254 uintptr_t ulii; in ped_to_bed_multichar_allele() local
5769 uintptr_t ulii; in ped_to_bed() local
6462 uintptr_t ulii; in lgen_to_bed() local
7076 uintptr_t ulii; in transposed_to_bed() local
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H A Dplink_family.c463 uintptr_t ulii; in erase_mendel_errors() local
738 uintptr_t ulii; in mendel_error_scan() local
1282 uintptr_t ulii; in populate_pedigree_rel_info() local
1778 uintptr_t ulii; in tdt_poo() local
2063 uintptr_t ulii; in tdt() local
2578 uintptr_t ulii; in get_sibship_info() local
3871 uintptr_t ulii; in dfam() local
4988 uintptr_t ulii; in qfam_compute_bw() local
5469 uintptr_t ulii; in qfam() local
H A Dplink_dosage.c77 uintptr_t ulii; in dosage_load_score_files() local
585 uintptr_t ulii = 0; in plink1_dosage() local
H A Dplink_cluster.c101 uintptr_t ulii; in load_clusters() local
1067 uintptr_t ulii; in read_dists() local
2921 uintptr_t ulii = 0; in mds_plot() local
3219 uintptr_t ulii = 0; in mds_plot_eigendecomp() local
H A Dplink_homozyg.c1249 uintptr_t ulii; in assign_allelic_match_groups() local
1406 uintptr_t ulii; in roh_pool() local
2491 uintptr_t ulii; in calc_homozyg() local
H A Dplink_assoc.c624 uintptr_t ulii; in calc_git() local
731 uintptr_t ulii; in calc_qgit() local
834 uintptr_t ulii; in calc_qgit_lin() local
2883 uintptr_t ulii; in qassoc_adapt_thread() local
3064 uintptr_t ulii; in qassoc_adapt_lin_thread() local
6115 uintptr_t ulii; in model_assoc() local
7819 uintptr_t ulii; in qassoc_set_test() local
8154 uintptr_t ulii; in qassoc() local
9183 uintptr_t ulii; in gxe_assoc() local
9620 uintptr_t ulii; in calc_git_missing() local
[all …]
/dports/biology/plink/plink-ng-79b2df8c/2.0/include/
H A Dplink2_bits.cc92 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecAnd() local
132 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecInvmask() local
172 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecOr() local
207 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecInvert() local
232 uintptr_t ulii = (*bitarr_iter) >> (loc % kBitsPerWord); in AdvTo1Bit() local
271 uintptr_t ulii = (*bitarr_iter) >> (loc % kBitsPerWord); in AdvBoundedTo1Bit() local
290 uintptr_t ulii = (~(*bitarr_ptr)) >> (loc % kBitsPerWord); in AdvBoundedTo0Bit() local
311 uintptr_t ulii; in FindLast1BitBefore() local
2229 for (uintptr_t ulii = 0; ulii != byte_ct; ++ulii) { in BytesumArr() local
2296 for (uintptr_t ulii = 0; ulii != byte_ct; ++ulii) { in CountByte() local
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H A Dplink2_base.h572 HEADER_INLINE uint32_t ctzw(unsigned long ulii) { in ctzw()
576 HEADER_INLINE uint32_t bsrw(unsigned long ulii) { in bsrw()
817 HEADER_INLINE VecW vecw_set1(uintptr_t ulii) { in vecw_set1()
1157 HEADER_INLINE VecW vecw_set1(uintptr_t ulii) { in vecw_set1()
1511 HEADER_INLINE VecW vecw_set1(uintptr_t ulii) { in vecw_set1()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_random.cc70 for (uintptr_t ulii = 0; ulii != idx_ct; ++ulii) { in FillGaussianDArrMain() local
145 for (uintptr_t ulii = start_idx; ulii != end_idx; ++ulii) { in RandomizeArenaMain() local
H A Dplink2_matrix.h451 for (uintptr_t ulii = 0; ulii != row_ct; ++ulii) { in PrintMatrix() local
460 for (uintptr_t ulii = 0; ulii != row_ct; ++ulii) { in PrintFmatrix() local
H A Dplink2_matrix_calc.cc2955 for (uintptr_t ulii = 0; ulii != cur_pair_ct_x2; ++ulii) { in CalcKingTableSubset() local
2963 for (uintptr_t ulii = 0; ulii != cur_pair_ct_x2; ++ulii) { in CalcKingTableSubset() local
4386 for (uintptr_t ulii = 0; ulii != full_write_ct; ++ulii) { in CalcGrm() local
5196 for (uintptr_t ulii = 0; ulii != gg_size; ++ulii) { in CalcPca() local
5200 for (uintptr_t ulii = 0; ulii != gg_size; ++ulii) { in CalcPca() local
5267 for (uintptr_t ulii = 0; ulii != b_size; ++ulii) { in CalcPca() local
7071 for (uintptr_t ulii = 0; ulii != vscore_ct; ++ulii) { in VscoreThread() local
7075 for (uintptr_t ulii = 0; ulii != vscore_ct; ++ulii) { in VscoreThread() local
7080 for (uintptr_t ulii = 0; ulii != vscore_ct; ++ulii) { in VscoreThread() local
7173 for (uintptr_t ulii = 0; ulii != kVscoreBlockSize; ++ulii) { in VscoreThread() local
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H A Dplink2_cmdline.h1049 for (uintptr_t ulii = 0; ulii != entry_ct; ulii++) { in SetAllI32Arr() local
1055 for (uintptr_t ulii = 0; ulii != entry_ct; ulii++) { in SetAllU32Arr() local
1061 for (uintptr_t ulii = 0; ulii != entry_ct; ulii++) { in ZeroFArr() local
1067 for (uintptr_t ulii = 0; ulii != entry_ct; ulii++) { in ZeroDArr() local
1075 for (uintptr_t ulii = 0; ulii != entry_ct; ulii++) { in ZeromovFArr() local
H A Dplink2_matrix.cc1145 for (uintptr_t ulii = 0; ulii != orig_dim_l; ++ulii) { in invert_rank1_symm_start() local
1215 for (uintptr_t ulii = 0; ulii != orig_dim_l; ++ulii) { in InvertRank1SymmDiag() local
1328 for (uintptr_t ulii = 0; ulii != orig_dim_l; ++ulii) { in InvertRank2SymmDiag() local
H A Dplink2_cmdline.cc940 uintptr_t ulii; in FindLast1BitBeforeBounded() local
965 for (uintptr_t ulii = 0; ulii != full_vec_ct; ++ulii) { in BitvecAndCopy() local
992 for (uintptr_t ulii = 0; ulii != full_vec_ct; ++ulii) { in BitvecInvmaskCopy() local
1028 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecInvertCopy() local
1106 for (uintptr_t ulii = 3; ulii < full_vec_ct; ulii += 4) { in BitvecInvertAndMask() local
1995 uintptr_t ulii = cur_pos % kBitsPerWord; in FindNth1BitFrom() local
H A Dplink2_adjust.cc737 for (uintptr_t ulii = 0; ulii != entry_ct / kBitsPerWordD2; ++ulii) { in AdjustFile() local

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