| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
| H A D | report_deletes.c | 83 static rc_t report_deletes_db( const VDBManager *vdb_mgr, in report_deletes_db()
150 static rc_t report_deletes_spec( const VDBManager *vdb_mgr, in report_deletes_spec()
221 const VDBManager *vdb_mgr; in report_deletes() local
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| H A D | reref.c | 339 static rc_t report_ref_loc( const VDBManager *vdb_mgr, VFSManager * vfs_mgr, const char * seq_id ) in report_ref_loc()
358 static rc_t report_ref_obj( const VDBManager *vdb_mgr, VFSManager * vfs_mgr, const char * path, uin… in report_ref_obj()
407 static rc_t report_ref_database( const VDBManager *vdb_mgr, VFSManager * vfs_mgr, const char * path… in report_ref_database()
461 static rc_t report_references( const VDBManager *vdb_mgr, VFSManager * vfs_mgr, in report_references()
512 const VDBManager *vdb_mgr; in report_on_reference() local
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| H A D | cmdline_cmn.c | 608 const VDBManager *vdb_mgr, in prepare_db_table()
672 const VDBManager *vdb_mgr, in prepare_ref_iter()
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| H A D | sra-pileup.c | 1321 const VDBManager *vdb_mgr; member
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/ |
| H A D | vdb-copy.c | 479 VDBManager * vdb_mgr, in vdb_copy_make_dst_table()
702 VDBManager * vdb_mgr, in vdb_copy_detect_legacy()
739 VDBManager * vdb_mgr, in vdb_copy_match_columns()
801 VDBManager * vdb_mgr, in vdb_copy_open_source_table()
842 VDBManager * vdb_mgr, in vdb_copy_table2()
892 VDBManager * vdb_mgr, in vdb_copy_table()
1248 VDBManager * vdb_mgr, in vdb_copy_database()
1298 VDBManager * vdb_mgr ) in vdb_copy_perform()
1388 VDBManager * vdb_mgr; in vdb_copy_main() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/util/ |
| H A D | pacbio-correct.c | 91 VDBManager * vdb_mgr; in correct() local
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| H A D | schema-replace.c | 128 VDBManager * vdb_mgr; member
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/vdb/ |
| H A D | test-VDB-3061.cpp | 117 const VDBManager * vdb_mgr; in TEST_CASE() local
143 const VDBManager * vdb_mgr; in TEST_CASE() local
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| H A D | test-VDB-3060.cpp | 49 const VDBManager * vdb_mgr = NULL; variable
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/vdb/ |
| H A D | test-VDB-3061.cpp | 117 const VDBManager * vdb_mgr; in TEST_CASE() local
143 const VDBManager * vdb_mgr; in TEST_CASE() local
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| H A D | test-VDB-3060.cpp | 49 const VDBManager * vdb_mgr = NULL; variable
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/ |
| H A D | cmn_iter.c | 819 rc_t cmn_get_acc_type( KDirectory * dir, const VDBManager * vdb_mgr, in cmn_get_acc_type()
918 rc_t cmn_check_tbl_column( KDirectory * dir, const VDBManager * vdb_mgr, in cmn_check_tbl_column()
967 rc_t cmn_check_db_column( KDirectory * dir, const VDBManager * vdb_mgr, in cmn_check_db_column()
1028 VNamelist * cmn_get_table_names( KDirectory * dir, const VDBManager * vdb_mgr, in cmn_get_table_names()
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| H A D | tbl_join.c | 665 const VDBManager * vdb_mgr; member
743 const VDBManager * vdb_mgr, in extract_sra_row_count()
763 const VDBManager * vdb_mgr, in execute_tbl_join()
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| H A D | join.c | 892 const VDBManager * vdb_mgr, in extract_csra_row_count()
1225 const VDBManager * vdb_mgr; member
1320 const VDBManager * vdb_mgr, in execute_db_join()
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| H A D | sorter.c | 390 const VDBManager * vdb_mgr, in execute_lookup_production()
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| H A D | helper.h | 125 const VDBManager * vdb_mgr; member
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| H A D | fasterq-dump.c | 269 const VDBManager * vdb_mgr; /* created, but unused to avoid race-condition in threads */ member
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/pacbio-load/ |
| H A D | pacbio-load.c | 152 static rc_t pacbio_load_schema( KDirectory * wd, VDBManager * vdb_mgr, VSchema ** schema, const cha… in pacbio_load_schema()
409 VDBManager * vdb_mgr = NULL; in pacbio_load() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/ |
| H A D | vdb-diff.c | 310 const VDBManager * vdb_mgr; in perform_diff() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/ |
| H A D | fasta_dump.c | 430 const VDBManager *vdb_mgr; member
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