| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | blastdiag_unit_test.cpp | 49 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
86 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
124 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
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| H A D | blastoptions_unit_test.cpp | 298 const BlastInitialWordOptions* word_options, in s_GetInitialWordParameters()
385 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
553 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
642 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
687 CBlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
1298 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
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| H A D | ntscan_unit_test.cpp | 101 BlastInitialWordOptions* word_options; member
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | blastdiag_unit_test.cpp | 49 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
86 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
124 BlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
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| H A D | blastoptions_unit_test.cpp | 298 const BlastInitialWordOptions* word_options, in s_GetInitialWordParameters()
385 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
553 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
642 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
687 CBlastInitialWordOptions word_options; in BOOST_AUTO_TEST_CASE() local
1298 BlastInitialWordOptions* word_options; in BOOST_AUTO_TEST_CASE() local
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| H A D | ntscan_unit_test.cpp | 101 BlastInitialWordOptions* word_options; member
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_prelim.c | 53 const BlastInitialWordOptions* word_options, in BlastPrelimSearchThreadDataInit()
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| H A D | blast_returns.c | 473 const BlastInitialWordOptions* word_options, in Blast_SearchParamsFill()
559 const BlastInitialWordOptions* word_options, in Blast_SummaryReturnFill()
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| H A D | blast_options_api.h | 58 BlastInitialWordOptions* word_options; /**< Options for choosing and member
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| H A D | blast_prelim.h | 66 const BlastInitialWordOptions* word_options; /**< Options for ungapped member
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| H A D | twoseq_api.c | 104 BlastInitialWordOptions* word_options = options->word_options; in s_TwoSeqBasicFillOptions() local
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| H A D | blast_options_api.c | 50 BlastInitialWordOptions* word_options=NULL; in SBlastOptionsNew() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | blast_dbindex.cpp | 301 BlastInitialWordOptions * word_options ) in DoPreSearch()
577 BlastInitialWordOptions * word_options ) in IndexedDbRunSearch()
890 BlastInitialWordOptions * word_options ) in DoPreSearch()
1019 BlastInitialWordOptions * word_options ) in PreSearch()
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| H A D | prelim_stage.cpp | 220 BlastInitialWordOptions * word_options = opts_memento->m_InitWordOpts; in Run() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | blast_dbindex.cpp | 301 BlastInitialWordOptions * word_options ) in DoPreSearch()
577 BlastInitialWordOptions * word_options ) in IndexedDbRunSearch()
890 BlastInitialWordOptions * word_options ) in DoPreSearch()
1019 BlastInitialWordOptions * word_options ) in PreSearch()
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| H A D | prelim_stage.cpp | 220 BlastInitialWordOptions * word_options = opts_memento->m_InitWordOpts; in Run() local
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| /dports/security/gcr/gcr-3.40.0/gcr/ |
| H A D | gcr-openssh.c | 166 const gchar *word_bits, *word_exponent, *word_modulus, *word_options, *outer; in parse_v1_public_line() local
477 const gchar *word_options, *word_algo, *word_key; in parse_v2_public_line() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_engine.c | 1341 const BlastInitialWordOptions* word_options, in BLAST_PreliminarySearchEngine()
1618 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearch()
1641 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearchWithInterrupt()
1733 const BlastInitialWordOptions* word_options, in Blast_RunFullSearch()
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| H A D | blast_options.c | 1624 BlastInitialWordOptions** word_options, in BLAST_InitDefaultOptions()
1736 const BlastInitialWordOptions* word_options, in BLAST_ValidateOptions()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_engine.c | 1341 const BlastInitialWordOptions* word_options, in BLAST_PreliminarySearchEngine()
1618 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearch()
1641 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearchWithInterrupt()
1733 const BlastInitialWordOptions* word_options, in Blast_RunFullSearch()
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| H A D | blast_options.c | 1624 BlastInitialWordOptions** word_options, in BLAST_InitDefaultOptions()
1736 const BlastInitialWordOptions* word_options, in BLAST_ValidateOptions()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_engine.c | 1464 const BlastInitialWordOptions* word_options, in BLAST_PreliminarySearchEngine()
1732 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearch()
1755 const BlastInitialWordOptions* word_options, in Blast_RunPreliminarySearchWithInterrupt()
1836 const BlastInitialWordOptions* word_options, in Blast_RunFullSearch()
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| H A D | blast_options.c | 1590 BlastInitialWordOptions** word_options, in BLAST_InitDefaultOptions()
1702 const BlastInitialWordOptions* word_options, in BLAST_ValidateOptions()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | rpsblast.c | 466 BlastInitialWordOptions* word_options = options->word_options; in s_FillOptions() local
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| H A D | blast_driver.c | 254 BlastInitialWordOptions* word_options = options->word_options; in s_FillOptions() local
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