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/dports/devel/libuninum/libuninum-2.7/
H A Duninum.c6080 mpz_t Residue; in AdditiveIntToString() local
6153 Residue = k; in CyrillicAlphabeticIntToString()
6202 mpz_t Residue; in GreekAlphabeticIntToString() local
6296 Residue = k; in RomanToStringAux()
6316 Residue -= 400; in RomanToStringAux()
6339 Residue -= 40; in RomanToStringAux()
6361 Residue -= 4; in RomanToStringAux()
7118 mpz_t Residue; in HebrewIntToString() local
7148 mpz_sub_ui(Residue,Residue,15); in HebrewIntToString()
7153 mpz_sub_ui(Residue,Residue,16); in HebrewIntToString()
[all …]
/dports/science/py-avogadrolibs/avogadrolibs-1.94.0/docs/api/class/
H A Dclass_avogadro_1_1_core_1_1_residue.rst1 Class Avogadro::Core::Residue
4 .. doxygenclass:: Avogadro::Core::Residue
/dports/science/avogadrolibs/avogadrolibs-1.94.0/docs/api/class/
H A Dclass_avogadro_1_1_core_1_1_residue.rst1 Class Avogadro::Core::Residue
4 .. doxygenclass:: Avogadro::Core::Residue
/dports/science/avogadrolibs/avogadrolibs-1.94.0/tests/io/
H A Dmmtftest.cpp36 using Avogadro::Core::Residue;
122 Residue& res = molecule.residue(0); in TEST()
128 Residue& res2 = molecule.residue(579); in TEST()
134 Residue& res3 = molecule.residue(580); in TEST()
/dports/science/py-avogadrolibs/avogadrolibs-1.94.0/tests/io/
H A Dmmtftest.cpp36 using Avogadro::Core::Residue;
122 Residue& res = molecule.residue(0); in TEST()
128 Residue& res2 = molecule.residue(579); in TEST()
134 Residue& res3 = molecule.residue(580); in TEST()
/dports/biology/hhsuite/hh-suite-3.3.0/scripts/hhpred/lib/
H A Dmodeller.pm1624 my $Residue = $_[0];
1649 if (grep(/\s$Residue:$Atom\s/,@ATMGRP01)){@alternatives=@ATMGRP01;}
1650 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP02)){@alternatives=@ATMGRP02;}
1651 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP03)){@alternatives=@ATMGRP03;}
1652 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP04)){@alternatives=@ATMGRP04;}
1653 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP05)){@alternatives=@ATMGRP05;}
1654 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP06)){@alternatives=@ATMGRP06;}
1655 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP07)){@alternatives=@ATMGRP07;}
1656 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP08)){@alternatives=@ATMGRP08;}
1657 elsif (grep(/\s$Residue:$Atom\s/,@ATMGRP09)){@alternatives=@ATMGRP09;}
[all …]
/dports/biology/jalview/jalview/src/jalview/xml/binding/sifts/
H A DEntry.java1819 protected List<Entry.Entity.Segment.ListResidue.Residue> residue;
1843 public List<Entry.Entity.Segment.ListResidue.Residue> getResidue() { in getResidue()
1845 residue = new ArrayList<Entry.Entity.Segment.ListResidue.Residue>(); in getResidue()
1896 public static class Residue { class in Entry.Entity.Segment.ListResidue
1898 protected List<Entry.Entity.Segment.ListResidue.Residue.CrossRefDb> crossRefDb;
1899 … protected List<Entry.Entity.Segment.ListResidue.Residue.ResidueDetail> residueDetail;
1933 … public List<Entry.Entity.Segment.ListResidue.Residue.CrossRefDb> getCrossRefDb() { in getCrossRefDb()
1935 … crossRefDb = new ArrayList<Entry.Entity.Segment.ListResidue.Residue.CrossRefDb>(); in getCrossRefDb()
1962 … public List<Entry.Entity.Segment.ListResidue.Residue.ResidueDetail> getResidueDetail() { in getResidueDetail()
1964 … residueDetail = new ArrayList<Entry.Entity.Segment.ListResidue.Residue.ResidueDetail>(); in getResidueDetail()
/dports/science/mmdb2/mmdb2-2.0.20/mmdb2/
H A Dmmdb_atom.h144 friend class Residue; variable
465 DefineFactoryFunctions(Residue);
467 class Residue : public UDData {
488 Residue ();
489 Residue ( PChain Chain_Owner );
490 Residue ( PChain Chain_Owner, const ResName resName,
492 Residue ( io::RPStream Object );
493 ~Residue();
/dports/math/vtk9/VTK-9.1.0/IO/Chemistry/
H A DvtkMoleculeReaderBase.cxx47 this->Residue = nullptr; in vtkMoleculeReaderBase()
137 if (!this->Residue) in ReadMolecule()
139 this->Residue = vtkSmartPointer<vtkIdTypeArray>::New(); in ReadMolecule()
143 this->Residue->Reset(); in ReadMolecule()
145 this->Residue->SetName("residue"); in ReadMolecule()
146 output->GetPointData()->AddArray(this->Residue); in ReadMolecule()
/dports/math/cado-nfs/cado-nfs-f4284e2391121b2bfb97bc4880b6273c7250dc2f/tests/sieve/ecm/
H A Dtest_Weierstrass.cpp25 typedef typename MODULUS::Residue Residue; typedef in TestWeierstrass
45 setResidue ( Residue &r, const Modulus &m, const cxx_mpz &v ) const in setResidue()
58 Residue x ( m ), y ( m ); in setPoint()
72 Residue x ( m ), y ( m ), z ( m ); in setPoint()
189 Residue a ( *m ); in parseLine()
/dports/math/givaro/givaro-4.1.1/src/library/poly1/
H A Dgivpoly1proot.inl35 template<class Residue>
36 …actorDom<Domain,Tag, RandomIterator>::find_irred_binomial (Element& R, Degree n, Residue MOD) const
38 for(Residue a=0; a<MOD; ++a) {
54 template<class Residue>
75 template<class Residue>
99 template<class Residue>
135 template<class Residue>
170 template<class Residue>
207 template<class Residue>
257 template<class Residue>
[all …]
/dports/science/gchemutils/gnome-chemistry-utils-0.14.16/libs/gcu/
H A Ddocument.h43 class Residue; variable
150 virtual Residue *CreateResidue (char const *name, char const *symbol, Molecule *molecule);
160 virtual Residue const *GetResidue (char const *symbol, bool *ambiguous = NULL);
H A Dformula.h228 class Residue; variable
244 FormulaResidue (Residue const *res, char const *symbol, int Z);
271 Residue const *residue;
/dports/math/latte-integrale/latte-version_1_7_6/
H A DTODO13 * Residue calculations:
14 - "Re-implement" Residue in terms of Residue_Single_Cone (Residue.cpp).
/dports/science/gabedit/GabeditSrc251_300720/src/Geometry/
H A DBuildPolyPeptide.c134 g_free(G[i].Residue); in init_variables()
158 g_free(G[i].Residue); in destroy_dlg()
250 geometry0[n].Residue = g_strdup(G[i].Residue); in define_geometry_to_draw()
267 geometry[n].Residue = g_strdup(geometry0[n].Residue); in define_geometry_to_draw()
393 G[j].Residue=g_strdup(Frag.Atoms[i].Residue); in add_fragment()
473 G[Nb].Residue = g_strdup("H"); in add_fragment()
541 if(G[i].Residue) g_free(G[i].Residue); in delete_last_fragment()
567 if(!strcmp(G[i].Residue , "NHE")) { CA = N;} in delete_last_fragment()
610 …if(Nb>0 && (strlen(G[Nb-1].Residue)<4 || (strlen(G[Nb-1].Residue)==4 && (G[Nb-1].Residue[0]=='N'||… in undo()
617 sprintf(fragName,"%s",G[Nb-1].Residue+1); in undo()
[all …]
/dports/science/gchemutils/gnome-chemistry-utils-0.14.16/plugins/paint/residues/
H A Dplugin.h33 class Residue; variable
45 void OnNewResidue (gcp::Residue *res);
/dports/math/gap/gap-4.11.0/pkg/FactInt-1.6.3/lib/
H A Dpplus1.gi64 local Residue,ResNo,a,
99 Residue := 1;
101 Info(IntegerFactorizationInfo,2,"Residue no. ",ResNo);
102 a := [[Residue,1],[1,0]];
132 Residue := NextPrimeInt(Residue);
/dports/biology/jalview/jalview/src/MCview/
H A DResidue.java25 public class Residue class
33 public Residue(Vector<Atom> resAtoms, int number, int count) in Residue() method in Residue
/dports/math/cado-nfs/cado-nfs-f4284e2391121b2bfb97bc4880b6273c7250dc2f/utils/
H A Dmodredc64.cpp10 Modulus::inv (Residue &r, const Residue &A) const in inv()
128 Modulus::intinv (Residue &r, const Residue &A) const in intinv()
256 Residue R(*this); in batchinv_u64()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/
H A Dstyle_manager.cpp580 bool StyleManager::GetAtomStyle(const Residue *residue, in GetAtomStyle()
599 const Residue::AtomInfo *info = residue->GetAtomInfo(atom.aID); in GetAtomStyle()
606 if (info->classification == Residue::eAlphaBackboneAtom || in GetAtomStyle()
607 info->classification == Residue::ePartialBackboneAtom || in GetAtomStyle()
608 info->classification == Residue::eCompleteBackboneAtom) { in GetAtomStyle()
614 } else if (info->classification == Residue::eSideChainAtom) { in GetAtomStyle()
644 if (info->classification == Residue::eAlphaBackboneAtom || in GetAtomStyle()
645 info->classification == Residue::ePartialBackboneAtom || in GetAtomStyle()
931 const Residue::AtomInfo in GetBondStyle()
1071 if (info2->classification == Residue::eSideChainAtom && in GetBondStyle()
[all …]
/dports/biology/emboss/EMBOSS-6.6.0/doc/programs/master/emboss/apps/inc/
H A Dpepstats.output10 Average Residue Weight = 107.195 Charge = 1.5
16 Residue Number Mole% DayhoffStat
66 Average Residue Weight = 107.195 Charge = 1.5
72 Residue Number Mole% DayhoffStat
/dports/biology/dsr-pdb/dsr-pdb-1.0.3/doc/
H A Dmain_doc99 first is in Residue.h.
101 - add a new atom label to dsrpdb::Residue::Atom_label.
103 - add a new entry to dsrpdb::Residue::atom_name_data_. The entry consists of a
104 string which identifies the atom in pdb, the dsrpdb::Residue::Atom_label, and
107 - add the dsrpdb::Residue::Atom_label to the appropriate
109 dsrpdb::Residue::get_residue_initialization_data
112 dsrpdb::Residue::get_residue_initialization_data. The bond lists are
/dports/science/gromacs/gromacs-2021.4/src/external/tng_io/include/tng/
H A Dtng_io.hpp21 class Residue;
44 friend class Residue;
1468 friend class Residue;
1507 class Residue class
1516 Residue(Trajectory * trajectory) in Residue() function in Tng::Residue
1524 ~Residue() in ~Residue()
1631 Residue *residue) in findResidue()
1645 Residue * residue) in addResidue()
1662 Residue * residue) in addResidueWithId()
/dports/science/nwchem-data/nwchem-7.0.2-release/contrib/marat/python/
H A DResidue.py9 class Residue: class
59 res0 = Residue()
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/contrib/marat/python/
H A DResidue.py9 class Residue: class
59 res0 = Residue()

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