| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/tabix_io/ |
| H A D | test_tabix_io.h | 47 SEQAN_DEFINE_TEST(test_tabix_io_read_indexed_vcf) in SEQAN_DEFINE_TEST() function
120 SEQAN_DEFINE_TEST(test_tabix_io_read_indexed_vcf) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/blast/ |
| H A D | test_blast_statistics.h | 42 SEQAN_DEFINE_TEST(test_blast_scoring_scheme_conversion) in SEQAN_DEFINE_TEST() function
77 SEQAN_DEFINE_TEST(test_blast_scoring_scheme) in SEQAN_DEFINE_TEST() function
184 SEQAN_DEFINE_TEST(test_blast_blastmatch_stats_and_score) in SEQAN_DEFINE_TEST() function
221 SEQAN_DEFINE_TEST(test_blast_blastmatch_bit_score_e_value) in SEQAN_DEFINE_TEST() function
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| H A D | test_blast_misc.h | 42 SEQAN_DEFINE_TEST(test_blast_program) in SEQAN_DEFINE_TEST() function
86 SEQAN_DEFINE_TEST(test_blast_context_targs) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/graph_types/ |
| H A D | test_graph_types_derived.cpp | 38 SEQAN_DEFINE_TEST(test_graph_types_derived_oracle) in SEQAN_DEFINE_TEST() function
55 SEQAN_DEFINE_TEST(test_graph_types_derived_trie) in SEQAN_DEFINE_TEST() function
131 SEQAN_DEFINE_TEST(test_graph_types_derived_set_oracle) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/parallel/ |
| H A D | test_parallel_splitting.h | 45 SEQAN_DEFINE_TEST(test_parallel_splitter_equidistant) in SEQAN_DEFINE_TEST() function
88 SEQAN_DEFINE_TEST(test_parallel_splitting_compute_splitters) in SEQAN_DEFINE_TEST() function
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| H A D | test_parallel_atomic_misc.h | 98 SEQAN_DEFINE_TEST(test_parallel_atomic_min) in SEQAN_DEFINE_TEST() function
116 SEQAN_DEFINE_TEST(test_parallel_atomic_max) in SEQAN_DEFINE_TEST() function
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| H A D | test_parallel_algorithms.h | 60 SEQAN_DEFINE_TEST(test_parallel_sum) in SEQAN_DEFINE_TEST() function
80 SEQAN_DEFINE_TEST(test_parallel_partial_sum) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seeds/ |
| H A D | test_seeds_seed_simple.cpp | 43 SEQAN_DEFINE_TEST(test_seeds_seed_simple_constructors) in SEQAN_DEFINE_TEST() function
81 SEQAN_DEFINE_TEST(test_seeds_seed_simple_setters) in SEQAN_DEFINE_TEST() function
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| H A D | test_seeds_extension.cpp | 458 SEQAN_DEFINE_TEST(test_seeds_extension_match_extension_simple) in SEQAN_DEFINE_TEST() function
465 SEQAN_DEFINE_TEST(test_seeds_extension_ungapped_xdrop_extension_simple) in SEQAN_DEFINE_TEST() function
472 SEQAN_DEFINE_TEST(test_seeds_extension_gapped_xdrop_extension_simple) in SEQAN_DEFINE_TEST() function
479 SEQAN_DEFINE_TEST(test_seeds_extension_match_extension_chained) in SEQAN_DEFINE_TEST() function
486 SEQAN_DEFINE_TEST(test_seeds_extension_ungapped_xdrop_extension_chained) in SEQAN_DEFINE_TEST() function
493 SEQAN_DEFINE_TEST(test_seeds_extension_gapped_xdrop_extension_chained) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_algorithms_dynamic_gap.h | 269 SEQAN_DEFINE_TEST(test_alignment_algorithms_global_dynamic_cost) in SEQAN_DEFINE_TEST() function
277 SEQAN_DEFINE_TEST(test_alignment_algorithms_global_dynamic_cost_banded) in SEQAN_DEFINE_TEST() function
285 SEQAN_DEFINE_TEST(test_alignment_algorithms_local_dynamic_cost) in SEQAN_DEFINE_TEST() function
293 SEQAN_DEFINE_TEST(test_alignment_algorithms_local_dynamic_cost_banded) in SEQAN_DEFINE_TEST() function
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| H A D | test_alignment_dp_profile.h | 308 SEQAN_DEFINE_TEST(test_alignment_dp_profile_is_free_end_gaps) in SEQAN_DEFINE_TEST() function
313 SEQAN_DEFINE_TEST(test_alignment_dp_profile_is_global_alignment) in SEQAN_DEFINE_TEST() function
318 SEQAN_DEFINE_TEST(test_alignment_dp_profile_is_local_alignment) in SEQAN_DEFINE_TEST() function
323 SEQAN_DEFINE_TEST(test_alignment_dp_profile_is_traceback_enabled) in SEQAN_DEFINE_TEST() function
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| H A D | test_align_myers.h | 130 SEQAN_DEFINE_TEST(test_align_myers_test_short) { in SEQAN_DEFINE_TEST() function
174 SEQAN_DEFINE_TEST(test_align_myers_test_long) { in SEQAN_DEFINE_TEST() function
220 SEQAN_DEFINE_TEST(test_align_hirschberger) { in SEQAN_DEFINE_TEST() function
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| H A D | test_local_align.h | 51 SEQAN_DEFINE_TEST(testLocalAlign) { in SEQAN_DEFINE_TEST() function
204 SEQAN_DEFINE_TEST(testLocalAlign2) { in SEQAN_DEFINE_TEST() function
233 SEQAN_DEFINE_TEST(testBandedLocalAlign) { in SEQAN_DEFINE_TEST() function
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| H A D | test_alignment_dp_traceback.h | 41 SEQAN_DEFINE_TEST(test_align2_traceback_affine) in SEQAN_DEFINE_TEST() function
140 SEQAN_DEFINE_TEST(test_align2_traceback_linear_unbanded_alignment) in SEQAN_DEFINE_TEST() function
194 SEQAN_DEFINE_TEST(test_align2_traceback_linear_normal_banded_alignment) in SEQAN_DEFINE_TEST() function
250 SEQAN_DEFINE_TEST(test_align2_traceback_linear_wide_banded_alignment) in SEQAN_DEFINE_TEST() function
340 SEQAN_DEFINE_TEST(test_align2_traceback_linear_small_banded_alignment) in SEQAN_DEFINE_TEST() function
379 SEQAN_DEFINE_TEST(test_align2_traceback_gaps_left_linear_gaps) in SEQAN_DEFINE_TEST() function
427 SEQAN_DEFINE_TEST(test_align2_traceback_gaps_right_linear_gaps) in SEQAN_DEFINE_TEST() function
475 SEQAN_DEFINE_TEST(test_align2_traceback_gaps_left_affine_gaps) in SEQAN_DEFINE_TEST() function
575 SEQAN_DEFINE_TEST(test_align2_traceback_gaps_right_affine_gaps) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence/ |
| H A D | test_segment.h | 33 SEQAN_DEFINE_TEST(Infix) in SEQAN_DEFINE_TEST() function
148 SEQAN_DEFINE_TEST(Suffix) in SEQAN_DEFINE_TEST() function
231 SEQAN_DEFINE_TEST(ticket317) in SEQAN_DEFINE_TEST() function
279 SEQAN_DEFINE_TEST(ticket848) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/basic/ |
| H A D | test_basic_alphabet.h | 114 SEQAN_DEFINE_TEST(test_basic_alphabet_interface) in SEQAN_DEFINE_TEST() function
391 SEQAN_DEFINE_TEST(test_basic_conversions) in SEQAN_DEFINE_TEST() function
487 SEQAN_DEFINE_TEST(test_basic_alphabet_extreme_values) in SEQAN_DEFINE_TEST() function
508 SEQAN_DEFINE_TEST(test_basic_simple_types) { in SEQAN_DEFINE_TEST() function
518 SEQAN_DEFINE_TEST(test_basic_array_functions) in SEQAN_DEFINE_TEST() function
532 SEQAN_DEFINE_TEST(test_basic_alphabet_value_size) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_transport.h | 150 SEQAN_DEFINE_TEST(test_basic_transport_has_move_constructor)
165 SEQAN_DEFINE_TEST(test_basic_transport_default_overloads)
205 SEQAN_DEFINE_TEST(test_basic_transport_assign_move_set)
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/bam_io/ |
| H A D | test_write_sam.h | 43 SEQAN_DEFINE_TEST(test_bam_io_sam_write_header) in SEQAN_DEFINE_TEST() function
82 SEQAN_DEFINE_TEST(test_bam_io_sam_write_alignment) in SEQAN_DEFINE_TEST() function
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| H A D | test_write_bam.h | 45 SEQAN_DEFINE_TEST(test_bam_io_bam_write_header) in SEQAN_DEFINE_TEST() function
90 SEQAN_DEFINE_TEST(test_bam_io_bam_write_alignment) in SEQAN_DEFINE_TEST() function
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| H A D | test_read_sam.h | 43 SEQAN_DEFINE_TEST(test_bam_io_sam_read_header) in SEQAN_DEFINE_TEST() function
99 SEQAN_DEFINE_TEST(test_bam_io_sam_read_alignment) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
| H A D | test_find_backtracking.h | 127 SEQAN_DEFINE_TEST(test_find_backtracking_multiple_edit_banana_vs_ada_ana) in SEQAN_DEFINE_TEST() function
174 SEQAN_DEFINE_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana) in SEQAN_DEFINE_TEST() function
218 SEQAN_DEFINE_TEST(test_find_backtracking_single_hamming_banana_vs_ada) in SEQAN_DEFINE_TEST() function
252 SEQAN_DEFINE_TEST(test_find_backtracking_single_edit_banana_vs_ada) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align_parallel/ |
| H A D | test_align_wavefront_alignment_scheduler.h | 37 SEQAN_DEFINE_TEST(test_align_parallel_wavefront_alignment_scheduler_construct) in SEQAN_DEFINE_TEST() function
72 SEQAN_DEFINE_TEST(test_align_parallel_wavefront_alignment_scheduler_async) in SEQAN_DEFINE_TEST() function
182 SEQAN_DEFINE_TEST(test_align_parallel_wavefront_alignment_scheduler_async_with_exception) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/graph_msa/ |
| H A D | test_graph_tcoffee.h | 469 SEQAN_DEFINE_TEST(test_distances) in SEQAN_DEFINE_TEST() function
474 SEQAN_DEFINE_TEST(test_libraries) in SEQAN_DEFINE_TEST() function
478 SEQAN_DEFINE_TEST(test_external_libraries) in SEQAN_DEFINE_TEST() function
482 SEQAN_DEFINE_TEST(test_triplet_extension) in SEQAN_DEFINE_TEST() function
486 SEQAN_DEFINE_TEST(test_sop) in SEQAN_DEFINE_TEST() function
490 SEQAN_DEFINE_TEST(test_progressive) in SEQAN_DEFINE_TEST() function
494 SEQAN_DEFINE_TEST(test_reversable_fragments) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align_extend/ |
| H A D | test_align_extend.h | 45 SEQAN_DEFINE_TEST(test_align_extend_simple) in SEQAN_DEFINE_TEST() function
145 SEQAN_DEFINE_TEST(test_align_extend_simple_infixes_recomp) in SEQAN_DEFINE_TEST() function
267 SEQAN_DEFINE_TEST(test_align_extend_banded) in SEQAN_DEFINE_TEST() function
366 SEQAN_DEFINE_TEST(test_align_extend_xdrop) in SEQAN_DEFINE_TEST() function
433 SEQAN_DEFINE_TEST(test_align_extend_xdrop_banded) in SEQAN_DEFINE_TEST() function
535 SEQAN_DEFINE_TEST(test_align_extend_semiglobal) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/graph_align/ |
| H A D | test_graph_match_refinement.h | 48 SEQAN_DEFINE_TEST(RefineMatchesSelfEdges) in SEQAN_DEFINE_TEST() function
97 SEQAN_DEFINE_TEST(RefineInexactFragment) in SEQAN_DEFINE_TEST() function
196 SEQAN_DEFINE_TEST(GraphMatchRefine) in SEQAN_DEFINE_TEST() function
411 SEQAN_DEFINE_TEST(RefineAlign) in SEQAN_DEFINE_TEST() function
816 SEQAN_DEFINE_TEST(GraphMatchRefinement_Problem) in SEQAN_DEFINE_TEST() function
|