| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/random/ |
| H A D | test_random_util.h | 44 SEQAN_DEFINE_TEST(test_random_shuffle) in SEQAN_DEFINE_TEST() function
56 SEQAN_DEFINE_TEST(test_random_cvt_beta_param) in SEQAN_DEFINE_TEST() function
66 SEQAN_DEFINE_TEST(test_random_cvt_lognormal_param) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/basic/ |
| H A D | test_basic_alphabet_math.h | 44 SEQAN_DEFINE_TEST(test_basic_alphabet_math_metafunctions) in SEQAN_DEFINE_TEST() function
83 SEQAN_DEFINE_TEST(test_basic_alphabet_math_min_value)
90 SEQAN_DEFINE_TEST(test_basic_alphabet_math_max_value)
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| H A D | test_basic_alphabet_profile.h | 56 SEQAN_DEFINE_TEST(test_basic_alphabet_profile_metafunctions) in SEQAN_DEFINE_TEST() function
78 SEQAN_DEFINE_TEST(test_basic_alphabet_profile_constructors) in SEQAN_DEFINE_TEST() function
119 SEQAN_DEFINE_TEST(test_basic_alphabet_profile_relations) in SEQAN_DEFINE_TEST() function
137 SEQAN_DEFINE_TEST(test_basic_alphabet_profile_empty) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_holder.h | 31 SEQAN_DEFINE_TEST(test_basic_holder_simple_metafunctions) in SEQAN_DEFINE_TEST() function
78 SEQAN_DEFINE_TEST(test_basic_holder_simple_constructors) in SEQAN_DEFINE_TEST() function
114 SEQAN_DEFINE_TEST(test_basic_holder_simple_transport) in SEQAN_DEFINE_TEST() function
164 SEQAN_DEFINE_TEST(test_basic_holder_simple_transport_value) in SEQAN_DEFINE_TEST() function
211 SEQAN_DEFINE_TEST(test_basic_holder_simple_dependencies) in SEQAN_DEFINE_TEST() function
330 SEQAN_DEFINE_TEST(test_basic_holder_simple_accessor) in SEQAN_DEFINE_TEST() function
351 SEQAN_DEFINE_TEST(test_basic_holder_tristate_metafunctions) in SEQAN_DEFINE_TEST() function
398 SEQAN_DEFINE_TEST(test_basic_holder_tristate_constructors) in SEQAN_DEFINE_TEST() function
474 SEQAN_DEFINE_TEST(test_basic_holder_tristate_transport) in SEQAN_DEFINE_TEST() function
534 SEQAN_DEFINE_TEST(test_basic_holder_tristate_dependencies) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_array_construct_destruct.h | 187 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_metafunction_is_simple)
199 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_construct_value_pointer)
248 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_destruct_value_pointer)
286 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_construct_pointer)
405 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_destruct_pointer)
427 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_fill_pointer)
456 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_copy_forward_pointer)
520 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_copy_pointer)
556 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_move_forward_pointer)
620 SEQAN_DEFINE_TEST(test_basic_array_construct_destruct_array_move_pointer)
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| H A D | test_basic_construct_destruct.h | 164 SEQAN_DEFINE_TEST(test_basic_construct_destruct_metafunction_is_simple) in SEQAN_DEFINE_TEST() function
174 SEQAN_DEFINE_TEST(test_basic_construct_destruct_construct_value_pointer) in SEQAN_DEFINE_TEST() function
241 SEQAN_DEFINE_TEST(test_basic_construct_destruct_destruct_value_pointer) in SEQAN_DEFINE_TEST() function
277 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_construct_pointer) in SEQAN_DEFINE_TEST() function
391 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_destruct_pointer) in SEQAN_DEFINE_TEST() function
411 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_fill_pointer) in SEQAN_DEFINE_TEST() function
438 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_copy_forward_pointer) in SEQAN_DEFINE_TEST() function
498 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_copy_pointer) in SEQAN_DEFINE_TEST() function
532 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_move_forward_pointer) in SEQAN_DEFINE_TEST() function
592 SEQAN_DEFINE_TEST(test_basic_construct_destruct_array_move_pointer) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/graph_types/ |
| H A D | test_graph_types_property_map.cpp | 37 SEQAN_DEFINE_TEST(test_graph_types_property_map_external) in SEQAN_DEFINE_TEST() function
82 SEQAN_DEFINE_TEST(test_graph_types_property_map_external_assign_vertex_map) in SEQAN_DEFINE_TEST() function
107 SEQAN_DEFINE_TEST(test_graph_types_property_map_external_assign_edge_map) in SEQAN_DEFINE_TEST() function
133 SEQAN_DEFINE_TEST(test_graph_types_property_internal_pointer_map) in SEQAN_DEFINE_TEST() function
175 SEQAN_DEFINE_TEST(test_graph_types_property_internal_pointer_map_assign_edge_map_member) in SEQAN_DEFINE_TEST() function
206 SEQAN_DEFINE_TEST(test_graph_types_property_internal_map) in SEQAN_DEFINE_TEST() function
239 SEQAN_DEFINE_TEST(test_graph_types_property_internal_map_assign_edge_map) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/journaled_string_tree/ |
| H A D | test_basic_observable.h | 84 SEQAN_DEFINE_TEST(test_basic_observable_length) in SEQAN_DEFINE_TEST() function
103 SEQAN_DEFINE_TEST(test_basic_observable_set_observer) in SEQAN_DEFINE_TEST() function
117 SEQAN_DEFINE_TEST(test_basic_observable_notify) in SEQAN_DEFINE_TEST() function
132 SEQAN_DEFINE_TEST(test_basic_observable_make_observer_list) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/param_chooser/ |
| H A D | test_param_chooser.cpp | 49 SEQAN_DEFINE_TEST(test_param_chooser_quality_distribution_from_prb_file) in SEQAN_DEFINE_TEST() function
73 SEQAN_DEFINE_TEST(test_param_chooser_quality_distribution_from_fastq_file) in SEQAN_DEFINE_TEST() function
107 SEQAN_DEFINE_TEST(test_param_chooser_parse_gapped_params) in SEQAN_DEFINE_TEST() function
150 SEQAN_DEFINE_TEST(test_param_parse_shapes_from_file) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/parse_lm/ |
| H A D | test_parse_lm.h | 42 SEQAN_DEFINE_TEST(test_parse_lm_local_match_constructor) in SEQAN_DEFINE_TEST() function
75 SEQAN_DEFINE_TEST(test_parse_lm_local_match_store_constructor) in SEQAN_DEFINE_TEST() function
83 SEQAN_DEFINE_TEST(test_parse_lm_local_match_store_append_local_match) in SEQAN_DEFINE_TEST() function
126 SEQAN_DEFINE_TEST(test_parse_lm_parse_lastz_general) in SEQAN_DEFINE_TEST() function
158 SEQAN_DEFINE_TEST(test_parse_lm_parse_blastn_tabular) in SEQAN_DEFINE_TEST() function
191 SEQAN_DEFINE_TEST(test_parse_lm_parse_stellar_gff) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seeds/ |
| H A D | test_seeds_seed_chained.cpp | 52 SEQAN_DEFINE_TEST(test_seeds_seed_chained_assign) in SEQAN_DEFINE_TEST() function
66 SEQAN_DEFINE_TEST(test_seeds_seed_chained_metafunctions) in SEQAN_DEFINE_TEST() function
111 SEQAN_DEFINE_TEST(test_seeds_seed_chained_front_back) in SEQAN_DEFINE_TEST() function
131 SEQAN_DEFINE_TEST(test_seeds_seed_chained_append_diagonal) in SEQAN_DEFINE_TEST() function
159 SEQAN_DEFINE_TEST(test_seeds_seed_chained_truncate_diagonals) in SEQAN_DEFINE_TEST() function
181 SEQAN_DEFINE_TEST(test_seeds_seed_chained_iterators) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/find/ |
| H A D | test_find.cpp | 1224 SEQAN_DEFINE_TEST(test_find_online_Simple) { in SEQAN_DEFINE_TEST() function
1239 SEQAN_DEFINE_TEST(test_find_online_ShiftOr) { in SEQAN_DEFINE_TEST() function
1361 SEQAN_DEFINE_TEST(test_regression_rmbench) { in SEQAN_DEFINE_TEST() function
1582 SEQAN_DEFINE_TEST(test_find_on_segments) { in SEQAN_DEFINE_TEST() function
1603 SEQAN_DEFINE_TEST(test_myers_trigger_bug) { in SEQAN_DEFINE_TEST() function
1661 SEQAN_DEFINE_TEST(test_myers_find_begin) { in SEQAN_DEFINE_TEST() function
1811 SEQAN_DEFINE_TEST(test_pattern_copycon) { in SEQAN_DEFINE_TEST() function
1824 SEQAN_DEFINE_TEST(test_pattern_assign) { in SEQAN_DEFINE_TEST() function
1837 SEQAN_DEFINE_TEST(test_pattern_movecon) { in SEQAN_DEFINE_TEST() function
1848 SEQAN_DEFINE_TEST(test_pattern_moveassign) { in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence/ |
| H A D | test_stringset.h | 260 SEQAN_DEFINE_TEST(StringSet_Owner_Default) { in SEQAN_DEFINE_TEST() function
264 SEQAN_DEFINE_TEST(StringSet_Concat_Owner_Default) { in SEQAN_DEFINE_TEST() function
268 SEQAN_DEFINE_TEST(StringSet_Concat_Owner_ConcatDirect) { in SEQAN_DEFINE_TEST() function
272 SEQAN_DEFINE_TEST(StringSet_Id_Dependent_Tight) { in SEQAN_DEFINE_TEST() function
276 SEQAN_DEFINE_TEST(StringSet_Id_Dependent_Generous) { in SEQAN_DEFINE_TEST() function
280 SEQAN_DEFINE_TEST(StringSetIdHolder_Char_Dependent_Tight) { in SEQAN_DEFINE_TEST() function
284 SEQAN_DEFINE_TEST(StringSetIdHolder_Char_Dependent_Generous) { in SEQAN_DEFINE_TEST() function
314 SEQAN_DEFINE_TEST(test_find_motif_memory_leak_ticket_364) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/misc/ |
| H A D | test_misc_edit_environment.h | 44 SEQAN_DEFINE_TEST(test_misc_edit_environment_string_enumerator_hamming) in SEQAN_DEFINE_TEST() function
66 SEQAN_DEFINE_TEST(test_misc_edit_environment_string_enumerator_iterator_hamming) in SEQAN_DEFINE_TEST() function
90 SEQAN_DEFINE_TEST(test_misc_edit_environment_string_enumerator_edit) in SEQAN_DEFINE_TEST() function
112 SEQAN_DEFINE_TEST(test_misc_edit_environment_string_enumerator_iterator_edit) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/parallel/ |
| H A D | test_parallel_thread_pool.h | 37 SEQAN_DEFINE_TEST(test_parallel_thread_pool_construct) in SEQAN_DEFINE_TEST() function
48 SEQAN_DEFINE_TEST(test_parallel_thread_pool_spawn) in SEQAN_DEFINE_TEST() function
65 SEQAN_DEFINE_TEST(test_parallel_thread_pool_join) in SEQAN_DEFINE_TEST() function
94 SEQAN_DEFINE_TEST(test_parallel_thread_pool_destruct) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence_journaled/ |
| H A D | test_sequence_journaled.h | 1177 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_assign) in SEQAN_DEFINE_TEST() function
1182 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_set) in SEQAN_DEFINE_TEST() function
1187 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_host) in SEQAN_DEFINE_TEST() function
1192 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_clear) in SEQAN_DEFINE_TEST() function
1197 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_empty) in SEQAN_DEFINE_TEST() function
1212 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_insert) in SEQAN_DEFINE_TEST() function
1217 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_insert_value) in SEQAN_DEFINE_TEST() function
1237 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_length) in SEQAN_DEFINE_TEST() function
1252 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_reset) in SEQAN_DEFINE_TEST() function
1278 SEQAN_DEFINE_TEST(test_sequence_journaled_sorted_array_fuzzying) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/gff_io/ |
| H A D | test_gff_io.h | 45 SEQAN_DEFINE_TEST(test_store_io_read_record_context_gff) in SEQAN_DEFINE_TEST() function
102 SEQAN_DEFINE_TEST(test_store_io_write_record_context_gff) in SEQAN_DEFINE_TEST() function
192 SEQAN_DEFINE_TEST(test_store_io_read_record_gtf_pseudogenes) in SEQAN_DEFINE_TEST() function
258 SEQAN_DEFINE_TEST(test_store_io_read_record_context_gtf) in SEQAN_DEFINE_TEST() function
314 SEQAN_DEFINE_TEST(test_store_io_write_record_context_gtf) in SEQAN_DEFINE_TEST() function
349 SEQAN_DEFINE_TEST(test_store_io_gff_stream_read_record_gff) in SEQAN_DEFINE_TEST() function
402 SEQAN_DEFINE_TEST(test_store_io_gff_stream_read_record_gtf) in SEQAN_DEFINE_TEST() function
453 SEQAN_DEFINE_TEST(test_store_io_gff_stream_write_record_gff) in SEQAN_DEFINE_TEST() function
476 SEQAN_DEFINE_TEST(test_store_io_gff_stream_write_record_gtf) in SEQAN_DEFINE_TEST() function
499 SEQAN_DEFINE_TEST(test_gff_io_isOpen_fileIn) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
| H A D | test_index_creation.h | 52 SEQAN_DEFINE_TEST(testIndexModifiedStringReverseEsa) in SEQAN_DEFINE_TEST() function
65 SEQAN_DEFINE_TEST(testIndexModifiedStringReverseFM) in SEQAN_DEFINE_TEST() function
78 SEQAN_DEFINE_TEST(testIndexModifiedStringViewEsa) in SEQAN_DEFINE_TEST() function
91 SEQAN_DEFINE_TEST(testIndexModifiedStringViewFM) in SEQAN_DEFINE_TEST() function
104 SEQAN_DEFINE_TEST(testIssue519) in SEQAN_DEFINE_TEST() function
129 SEQAN_DEFINE_TEST(testIndexCreation) in SEQAN_DEFINE_TEST() function
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| H A D | test_qgram_index.h | 44 SEQAN_DEFINE_TEST(testGappedShapes) in SEQAN_DEFINE_TEST() function
72 SEQAN_DEFINE_TEST(testUngappedShapes) in SEQAN_DEFINE_TEST() function
104 SEQAN_DEFINE_TEST(testStepSize) in SEQAN_DEFINE_TEST() function
212 SEQAN_DEFINE_TEST(testUngappedQGramIndex) in SEQAN_DEFINE_TEST() function
268 SEQAN_DEFINE_TEST(testUngappedQGramIndexMulti) in SEQAN_DEFINE_TEST() function
321 SEQAN_DEFINE_TEST(testQGramFind) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/blast/ |
| H A D | test_blast_input.h | 145 SEQAN_DEFINE_TEST(test_blast_read_lowlevel) in SEQAN_DEFINE_TEST() function
324 SEQAN_DEFINE_TEST(test_blast_read_tabular_without_comments) in SEQAN_DEFINE_TEST() function
330 SEQAN_DEFINE_TEST(test_blast_read_tabular_without_comments_customfields) in SEQAN_DEFINE_TEST() function
336 SEQAN_DEFINE_TEST(test_blast_read_tabular_without_comments_legacy) in SEQAN_DEFINE_TEST() function
342 SEQAN_DEFINE_TEST(test_blast_read_tabular_without_comments_constexpr) in SEQAN_DEFINE_TEST() function
354 SEQAN_DEFINE_TEST(test_blast_read_tabular_without_comments_legacy_constexpr) in SEQAN_DEFINE_TEST() function
597 SEQAN_DEFINE_TEST(test_blast_read_tabular_with_comments) in SEQAN_DEFINE_TEST() function
603 SEQAN_DEFINE_TEST(test_blast_read_tabular_with_comments_customfields) in SEQAN_DEFINE_TEST() function
609 SEQAN_DEFINE_TEST(test_blast_read_tabular_with_comments_legacy) in SEQAN_DEFINE_TEST() function
615 SEQAN_DEFINE_TEST(test_blast_read_tabular_with_comments_constexpr) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/translation/ |
| H A D | test_translation.h | 297 SEQAN_DEFINE_TEST(test_translation_onestring_singleframe_allcodes) in SEQAN_DEFINE_TEST() function
348 SEQAN_DEFINE_TEST(test_translation_onestring_singleframe_allcodes_runtime) in SEQAN_DEFINE_TEST() function
457 SEQAN_DEFINE_TEST(test_translation_onestring_multiframe_serial) in SEQAN_DEFINE_TEST() function
463 SEQAN_DEFINE_TEST(test_translation_onestring_multiframe_concatdirect_serial) in SEQAN_DEFINE_TEST() function
469 SEQAN_DEFINE_TEST(test_translation_onestring_multiframe_parallel) in SEQAN_DEFINE_TEST() function
475 SEQAN_DEFINE_TEST(test_translation_onestring_multiframe_concatdirect_parallel) in SEQAN_DEFINE_TEST() function
641 SEQAN_DEFINE_TEST(test_translation_stringset_multiframe_serial) in SEQAN_DEFINE_TEST() function
647 SEQAN_DEFINE_TEST(test_translation_stringset_multiframe_concatdirect_serial) in SEQAN_DEFINE_TEST() function
653 SEQAN_DEFINE_TEST(test_translation_stringset_multiframe_parallel) in SEQAN_DEFINE_TEST() function
659 SEQAN_DEFINE_TEST(test_translation_stringset_multiframe_concatdirect_parallel) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/modifier/ |
| H A D | test_modifier_functors.h | 42 SEQAN_DEFINE_TEST(test_modifier_functors_functor_upcase) in SEQAN_DEFINE_TEST() function
51 SEQAN_DEFINE_TEST(test_modifier_functors_functor_lowcase) in SEQAN_DEFINE_TEST() function
60 SEQAN_DEFINE_TEST(test_modifier_functors_dna_complement) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seq_io/ |
| H A D | test_stream_read_embl.h | 354 SEQAN_DEFINE_TEST(test_stream_read_embl_single_char_array_stream) in SEQAN_DEFINE_TEST() function
367 SEQAN_DEFINE_TEST(test_stream_read_embl_record_char_array_stream) in SEQAN_DEFINE_TEST() function
380 SEQAN_DEFINE_TEST(test_stream_read_embl_single_mmap) in SEQAN_DEFINE_TEST() function
393 SEQAN_DEFINE_TEST(test_stream_read_embl_single_batch_mmap) in SEQAN_DEFINE_TEST() function
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| H A D | test_stream_read_genbank.h | 371 SEQAN_DEFINE_TEST(test_stream_read_genbank_single_char_array_stream) in SEQAN_DEFINE_TEST() function
384 SEQAN_DEFINE_TEST(test_stream_read_genbank_record_char_array_stream) in SEQAN_DEFINE_TEST() function
397 SEQAN_DEFINE_TEST(test_stream_read_genbank_single_mmap) in SEQAN_DEFINE_TEST() function
410 SEQAN_DEFINE_TEST(test_stream_read_genbank_single_batch_mmap) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/simple_intervals_io/ |
| H A D | test_simple_intervals_io.cpp | 42 SEQAN_DEFINE_TEST(test_simple_intervals_io_read_records) in SEQAN_DEFINE_TEST() function
70 SEQAN_DEFINE_TEST(test_simple_intervals_io_write_records) in SEQAN_DEFINE_TEST() function
98 SEQAN_DEFINE_TEST(test_simple_intervals_io_smart_file_read) in SEQAN_DEFINE_TEST() function
125 SEQAN_DEFINE_TEST(test_simple_intervals_io_smart_file_write) in SEQAN_DEFINE_TEST() function
|