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Searched refs:TNameStore (Results 26 – 50 of 57) sorted by relevance

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/dports/biology/seqan1/seqan-1.3.1/seqan/store/
H A Dstore_all.h47 template <typename TNameStore, typename TName>
50 typedef typename Position<TNameStore>::Type TId;
52 TNameStore *store;
57 NameStoreLess(TNameStore &_store, TName &_name): in NameStoreLess()
101 template <typename TNameStore, typename TName = typename Value<TNameStore>::Type>
104 typedef typename Position<TNameStore>::Type TId;
105 typedef NameStoreLess<TNameStore, TName> TLess;
109 TNameStore &store;
112 NameStoreCache(TNameStore &_store): in NameStoreCache()
235 appendName(TNameStore &store, TName &name) in appendName()
[all …]
H A Dstore_generated_forwards.h157 template <typename TNameStore, typename TName > struct NameStoreCache; // "seqan-1.3.1/seqan…
162 template <typename TNameStore, typename TName> struct NameStoreLess; // "seqan-1.3.1/seqan/s…
656 template <typename TNameStore, typename TName> inline void appendName(TNameStore &store, TName &nam…
657 template <typename TNameStore, typename TName, typename TContext> inline void appendName(TNameStore…
658 template <typename TNameStore, typename TName, typename TCNameStore, typename TCName> inline void a…
851 template <typename TNameStore, typename TName, typename TPos> inline bool getIdByName(TNameStore &s…
852 template <typename TNameStore, typename TName, typename TPos, typename TContext> inline bool getIdB…
853 …emplate <typename TNameStore, typename TName, typename TPos, typename TCNameStore, typename TCName…
1129 template <typename TNameStore, typename TName> inline void refresh(NameStoreCache<TNameStore, TName…
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/bam_io/
H A Dread_sam.h130 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
133 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
201 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
204 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
253 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
256 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
H A Dwrite_bam.h51 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
54 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
241 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
244 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
H A Dread_bam.h92 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
95 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
192 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
195 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/bam_io/
H A Dread_sam.h130 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
133 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
201 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
204 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
253 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
256 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
H A Dwrite_bam.h51 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
54 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
241 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
244 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
H A Dread_bam.h92 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
95 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
192 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
195 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/bam_io/
H A Dread_sam.h130 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
133 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
201 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
204 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
253 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
256 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
H A Dwrite_bam.h51 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
54 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
238 template <typename TTarget, typename TNameStore, typename TNameStoreCache, typename TStorageSpec>
241 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in write() argument
H A Dread_bam.h92 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
95 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
192 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
195 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/vcf_io/
H A Dvcf_file.h155 typedef StringSet<CharString> TNameStore;
156 typedef NameStoreCache<TNameStore> TNameStoreCache;
157 typedef VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/vcf_io/
H A Dvcf_file.h155 typedef StringSet<CharString> TNameStore;
156 typedef NameStoreCache<TNameStore> TNameStoreCache;
157 typedef VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/vcf_io/
H A Dvcf_file.h155 typedef StringSet<CharString> TNameStore;
156 typedef NameStoreCache<TNameStore> TNameStoreCache;
157 typedef VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;
H A Dread_vcf.h84 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
87 VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in readHeader() argument
148 template <typename TForwardIter, typename TNameStore, typename TNameStoreCache, typename TStorageSp…
151 VcfIOContext<TNameStore, TNameStoreCache, TStorageSpec> & context, in readRecord() argument
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/yara/
H A Dmisc_types.h124 typedef StringSet<CharString, Owner<ConcatDirect<TSpec> > > TNameStore;
125 typedef NameStoreCache<TNameStore> TNameStoreCache;
126 typedef BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/parse_lm/
H A Dlocal_match_store.h254 typedef StringSet<CharString> TNameStore; typedef
255 typedef NameStoreCache<TNameStore> TNameStoreCache_;
261 TNameStore sequenceNameStore;
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/parse_lm/
H A Dlocal_match_store.h254 typedef StringSet<CharString> TNameStore; typedef
255 typedef NameStoreCache<TNameStore> TNameStoreCache_;
261 TNameStore sequenceNameStore;
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/parse_lm/
H A Dlocal_match_store.h254 typedef StringSet<CharString> TNameStore; typedef
255 typedef NameStoreCache<TNameStore> TNameStoreCache_;
261 TNameStore sequenceNameStore;
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/store/
H A Dstore_io_sam.h171 typedef typename TFragmentStore::TContigNameStore TNameStore;
172 typedef NameStoreCache<TNameStore, CharString> TNameStoreCache;
173 typedef BamIOContext<TNameStore, TNameStoreCache, Dependent<> > Type;
301 template <typename TSpec, typename TConfig, typename TNameStore, typename TNameStoreCache,
305 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
395 typename TNameStore, typename TNameStoreCache,
402 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
536 typename TNameStore, typename TNameStoreCache,
543 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/store/
H A Dstore_io_sam.h171 typedef typename TFragmentStore::TContigNameStore TNameStore;
172 typedef NameStoreCache<TNameStore, CharString> TNameStoreCache;
173 typedef BamIOContext<TNameStore, TNameStoreCache, Dependent<> > Type;
301 template <typename TSpec, typename TConfig, typename TNameStore, typename TNameStoreCache,
305 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
395 typename TNameStore, typename TNameStoreCache,
402 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
536 typename TNameStore, typename TNameStoreCache,
543 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/store/
H A Dstore_io_sam.h171 typedef typename TFragmentStore::TContigNameStore TNameStore;
172 typedef NameStoreCache<TNameStore, CharString> TNameStoreCache;
173 typedef BamIOContext<TNameStore, TNameStoreCache, Dependent<> > Type;
301 template <typename TSpec, typename TConfig, typename TNameStore, typename TNameStoreCache,
305 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
409 typename TNameStore, typename TNameStoreCache,
416 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
550 typename TNameStore, typename TNameStoreCache,
557 BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> & ctx,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/mason2/
H A Dmason_splicing.cpp173 typedef seqan::StringSet<seqan::CharString> TNameStore; in run() typedef
174 typedef seqan::NameStoreCache<TNameStore> TNameStoreCache; in run()
175 TNameStore transcriptNames; in run()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/tabix_io/
H A Dtabix_index_tbi.h112 typedef StringSet<CharString, Owner<ConcatDirect<> > > TNameStore; typedef
127 TNameStore _nameStore;
128 NameStoreCache<TNameStore> _nameStoreCache;
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/tabix_io/
H A Dtabix_index_tbi.h112 typedef StringSet<CharString, Owner<ConcatDirect<> > > TNameStore; typedef
127 TNameStore _nameStore;
128 NameStoreCache<TNameStore> _nameStoreCache;

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