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/dports/biology/vcftools/vcftools-0.1.16/src/cpp/
H A Dvariant_file_format_convert.cpp43 …(*tmp_file) << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << 0 << "\t" << 0 << "\t" … in output_as_plink()
369 …TFAM << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << 0 << "\t" << 0 << "\t" << 0 <<… in output_as_plink_tped()
400 FAM << meta_data.indv[ui] << endl; in output_as_012_matrix()
532 indv_out << meta_data.indv[ui] << endl; in output_as_IMPUTE()
788 sites << ">" << meta_data.indv[ui] << "-" << k << endl; in output_as_LDhat_phased()
972 sites << ">" << meta_data.indv[ui] << endl; in output_as_LDhat_unphased()
1148 snps << ">" << meta_data.indv[ui] << "-" << k << endl; in output_as_LDhelmet()
1228 out << "\t" << meta_data.indv[ui]; in output_FORMAT_information()
1298 out << "\t" << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << meta_data.indv[ui]; in output_BEAGLE_genotype_likelihoods()
H A Dvariant_file_filters.cpp63 if (indv_to_keep_copy.find(meta_data.indv[ui]) == indv_to_keep_copy.end()) in filter_individuals_by_keep_list()
100 if (indv_to_exclude_copy.find(meta_data.indv[ui]) != indv_to_exclude_copy.end()) in filter_individuals_by_exclude_list()
H A Dvariant_file_output.cpp492 out << meta_data.indv[ui]; in output_indv_burden()
621 out << meta_data.indv[indv_count]; in output_indv_freq_burden()
4683 out << meta_data.indv[ui] << "\t" << meta_data.indv[uj]; in output_indv_relatedness_Manichaikul()
4789 out << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << Ajk[ui][ui] << endl; in output_indv_relatedness_Yang()
4795 out << meta_data.indv[ui] << "\t" << meta_data.indv[uj] << "\t" << Ajk[ui][uj] << endl; in output_indv_relatedness_Yang()
5290 vector<string>::iterator it = find(meta_data.indv.begin(), meta_data.indv.end(), child); in output_mendel_inconsistencies()
5291 if (it != meta_data.indv.end()) in output_mendel_inconsistencies()
5293 it = find(meta_data.indv.begin(), meta_data.indv.end(), mother); in output_mendel_inconsistencies()
5294 if (it != meta_data.indv.end()) in output_mendel_inconsistencies()
5296 it = find(meta_data.indv.begin(), meta_data.indv.end(), father); in output_mendel_inconsistencies()
[all …]
/dports/science/quantum-espresso/q-e-qe-6.7.0/PW/src/
H A Dallocate_nlpot.f9035 USE uspp, ONLY : indv, nhtol, nhtolm, ijtoh, qq_at, qq_nt, &
50 ALLOCATE( indv(nhm,nsp) )
H A Dinit_q_aeps.f9025 USE uspp, ONLY : indv, nhtol, nhtolm, nkb
144 jb = indv(jh,nt)
148 ib = indv(ih,nt)
H A Dgen_us_dj.f9022 USE uspp, ONLY: nkb, indv, nhtol, nhtolm
143 nb = indv(ih, nt)
H A Dgen_us_dy.f9023 USE uspp, ONLY: nkb, indv, nhtol, nhtolm
132 nb = indv(ih, nt)
H A Dinit_us_2.f9024 USE uspp, ONLY : nkb, nhtol, nhtolm, indv
131 IF (nb == indv(ih,nt) ) THEN
H A Dpaw_exx.f90410 USE uspp, ONLY : indv, ap, nhtolm,lpl,lpx
439 nb_ = indv(ih_,i%t)
440 mb_ = indv(jh_,i%t)
/dports/science/quantum-espresso/q-e-qe-6.7.0/test-suite/cp_o2/
H A Dbenchmark.out.git.inp=o2-us-para-pbe-5.in223 1 indv= 1 ang. mom= 0
224 2 indv= 2 ang. mom= 0
225 3 indv= 3 ang. mom= 1
226 4 indv= 3 ang. mom= 1
227 5 indv= 3 ang. mom= 1
228 6 indv= 4 ang. mom= 1
229 7 indv= 4 ang. mom= 1
230 8 indv= 4 ang. mom= 1
/dports/science/quantum-espresso/q-e-qe-6.7.0/test-suite/cp_sio2/
H A Dbenchmark.out.git.inp=sio2-us-lda-3.in278 1 indv= 1 ang. mom= 0
279 2 indv= 2 ang. mom= 0
280 3 indv= 3 ang. mom= 1
281 4 indv= 3 ang. mom= 1
282 5 indv= 3 ang. mom= 1
283 6 indv= 4 ang. mom= 1
284 7 indv= 4 ang. mom= 1
285 8 indv= 4 ang. mom= 1
294 1 indv= 1 ang. mom= 0
295 2 indv= 2 ang. mom= 1
[all …]
H A Dbenchmark.out.git.inp=sio2-us-lda-4.in278 1 indv= 1 ang. mom= 0
279 2 indv= 2 ang. mom= 0
280 3 indv= 3 ang. mom= 1
281 4 indv= 3 ang. mom= 1
282 5 indv= 3 ang. mom= 1
283 6 indv= 4 ang. mom= 1
284 7 indv= 4 ang. mom= 1
285 8 indv= 4 ang. mom= 1
294 1 indv= 1 ang. mom= 0
295 2 indv= 2 ang. mom= 1
[all …]
/dports/lang/pocl/pocl-1.8/lib/kernel/libclc/
H A Dcosh_fp32.cl49 vtype indv = trunc(y);
50 utype indi = convert_utype(indv);
53 vtype dy = y - indv;
H A Dcosh_fp64.cl56 vtype indv = trunc(y);
57 itype indi = convert_itype(indv);
60 vtype dy = y - indv;
H A Dsinh_fp32.cl50 vtype indv = trunc(y);
51 utype indi = convert_utype(indv);
54 vtype dy = y - indv;
H A Dsinh_fp64.cl55 vtype indv = trunc(y);
56 itype indi = convert_itype(indv);
59 vtype dy = y - indv;
/dports/science/quantum-espresso/q-e-qe-6.7.0/PP/src/
H A Dlocal_dos1d.f9023 USE uspp, ONLY: becsum, indv, nhtol, nhtoj
138 (indv(kh,np)==indv(ih,np))) THEN
H A Dlocal_dos_mag.f9027 USE uspp, ONLY : nkb, vkb, becsum, nhtol, nhtoj, indv, okvan
138 (indv(kh,np)==indv(ih,np))) THEN
H A Dcompute_sigma_avg.f9017 USE uspp, ONLY : nkb,qq_nt,vkb,nhtol,nhtoj,nhtolm,indv
215 (indv(kh,np)==indv(ih,np))) THEN
/dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/examples/example08/reference/
H A Dsi2.ensemble-dyn.out213 1 indv= 1 ang. mom= 0
214 2 indv= 2 ang. mom= 0
215 3 indv= 3 ang. mom= 1
216 4 indv= 3 ang. mom= 1
217 5 indv= 3 ang. mom= 1
/dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/src/
H A Dqqberry.f9019 use uspp, only: indv, lpx, lpl, ap,nhtolm, nkbus, indv_ijkb0
132 ivs=indv(iv,is)
133 jvs=indv(jv,is)
/dports/science/quantum-espresso/q-e-qe-6.7.0/GWW/simple/
H A Dinit_us_2_max.f9029 USE uspp, ONLY : nkb, nhtol, nhtolm, indv
119 if (nb.eq.indv (ih, nt) ) then
/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/clk/
H A Dclk-npcm7xx.c42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local
53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate()
59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()
/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/clk/
H A Dclk-npcm7xx.c42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local
53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate()
59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()
/dports/multimedia/libv4l/linux-5.13-rc2/drivers/clk/
H A Dclk-npcm7xx.c42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local
53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate()
59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()

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