/dports/biology/vcftools/vcftools-0.1.16/src/cpp/ |
H A D | variant_file_format_convert.cpp | 43 …(*tmp_file) << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << 0 << "\t" << 0 << "\t" … in output_as_plink() 369 …TFAM << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << 0 << "\t" << 0 << "\t" << 0 <<… in output_as_plink_tped() 400 FAM << meta_data.indv[ui] << endl; in output_as_012_matrix() 532 indv_out << meta_data.indv[ui] << endl; in output_as_IMPUTE() 788 sites << ">" << meta_data.indv[ui] << "-" << k << endl; in output_as_LDhat_phased() 972 sites << ">" << meta_data.indv[ui] << endl; in output_as_LDhat_unphased() 1148 snps << ">" << meta_data.indv[ui] << "-" << k << endl; in output_as_LDhelmet() 1228 out << "\t" << meta_data.indv[ui]; in output_FORMAT_information() 1298 out << "\t" << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << meta_data.indv[ui]; in output_BEAGLE_genotype_likelihoods()
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H A D | variant_file_filters.cpp | 63 if (indv_to_keep_copy.find(meta_data.indv[ui]) == indv_to_keep_copy.end()) in filter_individuals_by_keep_list() 100 if (indv_to_exclude_copy.find(meta_data.indv[ui]) != indv_to_exclude_copy.end()) in filter_individuals_by_exclude_list()
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H A D | variant_file_output.cpp | 492 out << meta_data.indv[ui]; in output_indv_burden() 621 out << meta_data.indv[indv_count]; in output_indv_freq_burden() 4683 out << meta_data.indv[ui] << "\t" << meta_data.indv[uj]; in output_indv_relatedness_Manichaikul() 4789 out << meta_data.indv[ui] << "\t" << meta_data.indv[ui] << "\t" << Ajk[ui][ui] << endl; in output_indv_relatedness_Yang() 4795 out << meta_data.indv[ui] << "\t" << meta_data.indv[uj] << "\t" << Ajk[ui][uj] << endl; in output_indv_relatedness_Yang() 5290 vector<string>::iterator it = find(meta_data.indv.begin(), meta_data.indv.end(), child); in output_mendel_inconsistencies() 5291 if (it != meta_data.indv.end()) in output_mendel_inconsistencies() 5293 it = find(meta_data.indv.begin(), meta_data.indv.end(), mother); in output_mendel_inconsistencies() 5294 if (it != meta_data.indv.end()) in output_mendel_inconsistencies() 5296 it = find(meta_data.indv.begin(), meta_data.indv.end(), father); in output_mendel_inconsistencies() [all …]
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/dports/science/quantum-espresso/q-e-qe-6.7.0/PW/src/ |
H A D | allocate_nlpot.f90 | 35 USE uspp, ONLY : indv, nhtol, nhtolm, ijtoh, qq_at, qq_nt, & 50 ALLOCATE( indv(nhm,nsp) )
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H A D | init_q_aeps.f90 | 25 USE uspp, ONLY : indv, nhtol, nhtolm, nkb 144 jb = indv(jh,nt) 148 ib = indv(ih,nt)
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H A D | gen_us_dj.f90 | 22 USE uspp, ONLY: nkb, indv, nhtol, nhtolm 143 nb = indv(ih, nt)
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H A D | gen_us_dy.f90 | 23 USE uspp, ONLY: nkb, indv, nhtol, nhtolm 132 nb = indv(ih, nt)
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H A D | init_us_2.f90 | 24 USE uspp, ONLY : nkb, nhtol, nhtolm, indv 131 IF (nb == indv(ih,nt) ) THEN
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H A D | paw_exx.f90 | 410 USE uspp, ONLY : indv, ap, nhtolm,lpl,lpx 439 nb_ = indv(ih_,i%t) 440 mb_ = indv(jh_,i%t)
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/dports/science/quantum-espresso/q-e-qe-6.7.0/test-suite/cp_o2/ |
H A D | benchmark.out.git.inp=o2-us-para-pbe-5.in | 223 1 indv= 1 ang. mom= 0 224 2 indv= 2 ang. mom= 0 225 3 indv= 3 ang. mom= 1 226 4 indv= 3 ang. mom= 1 227 5 indv= 3 ang. mom= 1 228 6 indv= 4 ang. mom= 1 229 7 indv= 4 ang. mom= 1 230 8 indv= 4 ang. mom= 1
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/dports/science/quantum-espresso/q-e-qe-6.7.0/test-suite/cp_sio2/ |
H A D | benchmark.out.git.inp=sio2-us-lda-3.in | 278 1 indv= 1 ang. mom= 0 279 2 indv= 2 ang. mom= 0 280 3 indv= 3 ang. mom= 1 281 4 indv= 3 ang. mom= 1 282 5 indv= 3 ang. mom= 1 283 6 indv= 4 ang. mom= 1 284 7 indv= 4 ang. mom= 1 285 8 indv= 4 ang. mom= 1 294 1 indv= 1 ang. mom= 0 295 2 indv= 2 ang. mom= 1 [all …]
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H A D | benchmark.out.git.inp=sio2-us-lda-4.in | 278 1 indv= 1 ang. mom= 0 279 2 indv= 2 ang. mom= 0 280 3 indv= 3 ang. mom= 1 281 4 indv= 3 ang. mom= 1 282 5 indv= 3 ang. mom= 1 283 6 indv= 4 ang. mom= 1 284 7 indv= 4 ang. mom= 1 285 8 indv= 4 ang. mom= 1 294 1 indv= 1 ang. mom= 0 295 2 indv= 2 ang. mom= 1 [all …]
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/dports/lang/pocl/pocl-1.8/lib/kernel/libclc/ |
H A D | cosh_fp32.cl | 49 vtype indv = trunc(y); 50 utype indi = convert_utype(indv); 53 vtype dy = y - indv;
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H A D | cosh_fp64.cl | 56 vtype indv = trunc(y); 57 itype indi = convert_itype(indv); 60 vtype dy = y - indv;
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H A D | sinh_fp32.cl | 50 vtype indv = trunc(y); 51 utype indi = convert_utype(indv); 54 vtype dy = y - indv;
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H A D | sinh_fp64.cl | 55 vtype indv = trunc(y); 56 itype indi = convert_itype(indv); 59 vtype dy = y - indv;
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/dports/science/quantum-espresso/q-e-qe-6.7.0/PP/src/ |
H A D | local_dos1d.f90 | 23 USE uspp, ONLY: becsum, indv, nhtol, nhtoj 138 (indv(kh,np)==indv(ih,np))) THEN
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H A D | local_dos_mag.f90 | 27 USE uspp, ONLY : nkb, vkb, becsum, nhtol, nhtoj, indv, okvan 138 (indv(kh,np)==indv(ih,np))) THEN
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H A D | compute_sigma_avg.f90 | 17 USE uspp, ONLY : nkb,qq_nt,vkb,nhtol,nhtoj,nhtolm,indv 215 (indv(kh,np)==indv(ih,np))) THEN
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/dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/examples/example08/reference/ |
H A D | si2.ensemble-dyn.out | 213 1 indv= 1 ang. mom= 0 214 2 indv= 2 ang. mom= 0 215 3 indv= 3 ang. mom= 1 216 4 indv= 3 ang. mom= 1 217 5 indv= 3 ang. mom= 1
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/dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/src/ |
H A D | qqberry.f90 | 19 use uspp, only: indv, lpx, lpl, ap,nhtolm, nkbus, indv_ijkb0 132 ivs=indv(iv,is) 133 jvs=indv(jv,is)
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/dports/science/quantum-espresso/q-e-qe-6.7.0/GWW/simple/ |
H A D | init_us_2_max.f90 | 29 USE uspp, ONLY : nkb, nhtol, nhtolm, indv 119 if (nb.eq.indv (ih, nt) ) then
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/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/clk/ |
H A D | clk-npcm7xx.c | 42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local 53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate() 59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/clk/ |
H A D | clk-npcm7xx.c | 42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local 53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate() 59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()
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/dports/multimedia/libv4l/linux-5.13-rc2/drivers/clk/ |
H A D | clk-npcm7xx.c | 42 unsigned long fbdv, indv, otdv1, otdv2; in npcm7xx_clk_pll_recalc_rate() local 53 indv = FIELD_GET(PLLCON_INDV, val); in npcm7xx_clk_pll_recalc_rate() 59 do_div(ret, indv * otdv1 * otdv2); in npcm7xx_clk_pll_recalc_rate()
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