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/dports/devel/boost-python-libs/boost_1_72_0/boost/graph/
H A Dbipartite.hpp152 … BiDirectionalIterator1, BiDirectionalIterator1> sequence1, std::pair <BiDirectionalIterator2, in reverse_mismatch() argument
155 if (sequence1.first == sequence1.second || sequence2.first == sequence2.second) in reverse_mismatch()
156 return std::make_pair (sequence1.first, sequence2.first); in reverse_mismatch()
158 BiDirectionalIterator1 iter1 = sequence1.second; in reverse_mismatch()
171 if (iter1 == sequence1.first) in reverse_mismatch()
/dports/databases/mysqlwsrep57-server/boost_1_59_0/boost/graph/
H A Dbipartite.hpp152 … BiDirectionalIterator1, BiDirectionalIterator1> sequence1, std::pair <BiDirectionalIterator2, in reverse_mismatch() argument
155 if (sequence1.first == sequence1.second || sequence2.first == sequence2.second) in reverse_mismatch()
156 return std::make_pair (sequence1.first, sequence2.first); in reverse_mismatch()
158 BiDirectionalIterator1 iter1 = sequence1.second; in reverse_mismatch()
171 if (iter1 == sequence1.first) in reverse_mismatch()
/dports/math/py-pystan/pystan-2.19.0.0/pystan/stan/lib/stan_math/lib/boost_1.69.0/boost/graph/
H A Dbipartite.hpp152 … BiDirectionalIterator1, BiDirectionalIterator1> sequence1, std::pair <BiDirectionalIterator2, in reverse_mismatch() argument
155 if (sequence1.first == sequence1.second || sequence2.first == sequence2.second) in reverse_mismatch()
156 return std::make_pair (sequence1.first, sequence2.first); in reverse_mismatch()
158 BiDirectionalIterator1 iter1 = sequence1.second; in reverse_mismatch()
171 if (iter1 == sequence1.first) in reverse_mismatch()
/dports/devel/hyperscan/boost_1_75_0/boost/graph/
H A Dbipartite.hpp155 std::pair< BiDirectionalIterator1, BiDirectionalIterator1 > sequence1, in reverse_mismatch()
158 if (sequence1.first == sequence1.second in reverse_mismatch()
160 return std::make_pair(sequence1.first, sequence2.first); in reverse_mismatch()
162 BiDirectionalIterator1 iter1 = sequence1.second; in reverse_mismatch()
175 if (iter1 == sequence1.first) in reverse_mismatch()
/dports/games/frogatto/frogatto-1.3.1/MacOSJet/boost/include/boost/graph/
H A Dbipartite.hpp152 … BiDirectionalIterator1, BiDirectionalIterator1> sequence1, std::pair <BiDirectionalIterator2, in reverse_mismatch() argument
155 if (sequence1.first == sequence1.second || sequence2.first == sequence2.second) in reverse_mismatch()
156 return std::make_pair (sequence1.first, sequence2.first); in reverse_mismatch()
158 BiDirectionalIterator1 iter1 = sequence1.second; in reverse_mismatch()
171 if (iter1 == sequence1.first) in reverse_mismatch()
/dports/lang/sbcl/sbcl-1.3.13/src/pcl/
H A Dsequence.lisp704 (sequence1 :start start1 :end end1)
709 ((or (funcall endp1 sequence1 state1 limit1 from-end1)
711 sequence1)
717 (sequence1 sequence2 &key start1 end1 start2 end2)
718 (:argument-precedence-order sequence2 sequence1))
720 ((sequence1 sequence) (sequence2 sequence) &key
723 ((eq sequence1 sequence2)
808 (sequence1 :start start1 :end end1 :from-end from-end)
844 (range1 (- (or end1 (length sequence1)) start1))
853 (sequence1 :start start1 :end end1 :from-end from-end)
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seeds/
H A Dtest_seeds_seed_set_base.cpp648 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingPossibleNoThreshold() local
676 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosRightChainingPossibleNoThreshold() local
705 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingImpossibleNoThreshold() local
719 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingImpossibleNoThreshold() local
749 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdNotReachedLength() local
758 …, 0, 2), 1, 2, Score<int, Simple>()/*TODO(holtgrew): unnecessary*/, sequence0, sequence1, Chaos()); in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdNotReachedLength()
781 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdReachedLength() local
818 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdNotReachedScored() local
829 bool ret = addSeed(set, s2, 1, 2, scoringScheme, sequence0, sequence1, Chaos()); in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdNotReachedScored()
853 DnaString sequence1 = "CCCCCCCCCC"; in testSeedsSeedSetAddSeedChaosLeftChainingPossibleThresholdReachedScored() local
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/dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/alignment/
H A D_pairwise.py645 def local_pairwise_align_ssw(sequence1, sequence2, **kwargs): argument
687 for seq in sequence1, sequence2:
693 if type(sequence1) is not type(sequence2):
696 % (type(sequence1).__name__, type(sequence2).__name__))
704 if isinstance(sequence1, Protein):
707 query = StripedSmithWaterman(str(sequence1), **kwargs)
722 if sequence1.has_metadata():
723 metadata1 = sequence1.metadata
727 constructor = type(sequence1)
/dports/games/libretro-scummvm/scummvm-7b1e929/engines/lastexpress/entities/
H A Drebecca.h71 …DECLARE_FUNCTION_4(callSavepoint, const char *sequence1, EntityIndex entity, ActionIndex action, c…
130 DECLARE_FUNCTION_3(updatePosition, const char *sequence1, CarIndex car, Position position)
139 DECLARE_FUNCTION_3(draw2, const char *sequence1, const char *sequence2, EntityIndex entity)
H A Dabbot.h77 DECLARE_FUNCTION_3(draw2, const char *sequence1, const char *sequence2, EntityIndex entity)
124 …DECLARE_FUNCTION_4(callSavepoint, const char *sequence1, EntityIndex entity, ActionIndex action, c…
133 DECLARE_FUNCTION_3(updatePosition, const char *sequence1, CarIndex car, Position position)
/dports/games/scummvm/scummvm-2.5.1/engines/lastexpress/entities/
H A Drebecca.h71 …DECLARE_FUNCTION_4(callSavepoint, const char *sequence1, EntityIndex entity, ActionIndex action, c…
130 DECLARE_FUNCTION_3(updatePosition, const char *sequence1, CarIndex car, Position position)
139 DECLARE_FUNCTION_3(draw2, const char *sequence1, const char *sequence2, EntityIndex entity)
H A Dabbot.h77 DECLARE_FUNCTION_3(draw2, const char *sequence1, const char *sequence2, EntityIndex entity)
124 …DECLARE_FUNCTION_4(callSavepoint, const char *sequence1, EntityIndex entity, ActionIndex action, c…
133 DECLARE_FUNCTION_3(updatePosition, const char *sequence1, CarIndex car, Position position)
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dseeds_combination.h233 TSequence1 const & sequence1, in _combineSeeds() argument
260 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
274 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
275 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
386 TSequence1 const & sequence1, in _combineSeeds() argument
414 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
428 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
429 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
/dports/biology/seqan1/seqan-1.3.1/seqan/seeds2/
H A Dseeds_combination.h230 TSequence1 const & sequence1, in _combineSeeds() argument
259 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
273 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
274 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
387 TSequence1 const & sequence1, in _combineSeeds() argument
417 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
431 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
432 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
H A Dalign_dynprog_banded_linear.h66 …ScoreValue, 2> & matrix, TSequence const & sequence0, TSequence const & sequence1, TDiagonal lower… in _alignBandedResizeMatrix() argument
70 (void) sequence1; // In case we do not run in debug mode. in _alignBandedResizeMatrix()
74 …SEQAN_ASSERT_GEQ_MSG(length(sequence1) - lowerDiagonal, length(sequence0), "Lower diagonal is not … in _alignBandedResizeMatrix()
75 …SEQAN_ASSERT_GEQ_MSG(length(sequence0) + upperDiagonal, length(sequence1), "Upper diagonal is not … in _alignBandedResizeMatrix()
200 …ScoreValue, 2> & matrix, TSequence const & sequence0, TSequence const & sequence1, Score<TScoreVal… in _alignBandedFillMatrix() argument
236 …for (TSequenceIterator it1 = begin(sequence1), it1end = end(sequence1); it1 != it1end; ++it1, ++se… in _alignBandedFillMatrix()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dseeds_combination.h233 TSequence1 const & sequence1, in _combineSeeds() argument
260 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
274 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
275 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
386 TSequence1 const & sequence1, in _combineSeeds() argument
414 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
428 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
429 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dseeds_combination.h233 TSequence1 const & sequence1, in _combineSeeds() argument
260 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
274 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
275 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
386 TSequence1 const & sequence1, in _combineSeeds() argument
414 tmpScore += score(scoringScheme, sequence0[posLeft0 + i], sequence1[posLeft1 + i]); in _combineSeeds()
428 …tmpScore -= score(scoringScheme, sequence0[posLeft0 + minGap - i], sequence1[posLeft1 + minGap - i… in _combineSeeds()
429 tmpScore += score(scoringScheme, sequence0[posRight0 - i], sequence1[posRight1 - i]); in _combineSeeds()
/dports/lang/abcl/abcl-src-1.8.0/src/org/armedbear/lisp/
H A Dextensible-sequences.lisp568 (sequence1 :start start1 :end end1)
573 ((or (funcall endp1 sequence1 state1 limit1 from-end1)
575 sequence1)
581 (sequence1 sequence2 &key start1 end1 start2 end2)
582 (:argument-precedence-order sequence2 sequence1))
584 ((sequence1 sequence) (sequence2 sequence) &key
586 (print sequence1)
589 ((eq sequence1 sequence2)
649 (sequence1 :start start1 :end end1 :from-end from-end)
686 (- (or end1 (length sequence1)) start1))))
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/dports/editors/emacs-devel/emacs-4d1968b/lisp/emacs-lisp/
H A Dseq.el424 (cl-defgeneric seq-set-equal-p (sequence1 sequence2 &optional testfn)
428 (and (seq-every-p (lambda (item1) (seq-contains-p sequence2 item1 testfn)) sequence1)
429 (seq-every-p (lambda (item2) (seq-contains-p sequence1 item2 testfn)) sequence2)))
471 (cl-defgeneric seq-union (sequence1 sequence2 &optional testfn)
479 (seq-reduce accum sequence1 '()))))
483 (cl-defgeneric seq-intersection (sequence1 sequence2 &optional testfn)
490 (seq-reverse sequence1)
493 (cl-defgeneric seq-difference (sequence1 sequence2 &optional testfn)
500 (seq-reverse sequence1)
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/alignment_free/
H A Daf_d2star.h90 TSequence const & sequence1, in _d2star() argument
99 append(seq1seq2, sequence1); in _d2star()
118 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
180 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/alignment_free/
H A Daf_d2star.h90 TSequence const & sequence1, in _d2star() argument
99 append(seq1seq2, sequence1); in _d2star()
118 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
180 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/alignment_free/
H A Daf_d2star.h90 TSequence const & sequence1, in _d2star() argument
99 append(seq1seq2, sequence1); in _d2star()
118 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
180 countKmers(kmerCounts1, sequence1, score.kmerSize); in _d2star()
/dports/finance/quantlib/QuantLib-1.20/Docs/pages/
H A Dutilities.docs43 // we have sequence1 and sequence2 and assume equal size:
46 std::transform(sequence1.begin(),sequence1.end(), // first sequence
62 // we have sequence1 and sequence2 and assume equal size:
64 make_coupling_iterator(sequence1.begin(),
67 make_coupling_iterator(sequence1.end(),
/dports/www/firefox/firefox-99.0/third_party/rust/webrtc-sdp/src/
H A Derror_tests.rs120 let sequence1 = SdpParserError::Sequence { in test_sdp_parser_error_sequence() localVariable
125 format!("{}", sequence1), in test_sdp_parser_error_sequence()
128 assert!(sequence1.source().is_none()); in test_sdp_parser_error_sequence()
/dports/net/kea/kea-2.0.1/src/lib/http/tests/
H A Dserver_client_unittests.cc1108 ASSERT_TRUE(sequence1); in testConsecutiveRequests()
1114 EXPECT_NE(sequence1->intValue(), sequence2->intValue()); in testConsecutiveRequests()
1166 ASSERT_TRUE(sequence1); in testMultipleDestinations()
1172 EXPECT_NE(sequence1->intValue(), sequence2->intValue()); in testMultipleDestinations()
1226 ASSERT_TRUE(sequence1); in testMultipleTlsContexts()
1232 EXPECT_NE(sequence1->intValue(), sequence2->intValue()); in testMultipleTlsContexts()
1264 ASSERT_TRUE(sequence1); in testIdleConnection()
1290 EXPECT_NE(sequence1->intValue(), sequence2->intValue()); in testIdleConnection()
1645 ASSERT_TRUE(sequence1); in testConnectCloseCallbacks()
1727 ASSERT_TRUE(sequence1); in testCloseIfOutOfBand()
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