Home
last modified time | relevance | path

Searched refs:stateInfo (Results 101 – 125 of 496) sorted by relevance

12345678910>>...20

/dports/biology/ugene/ugene-40.1/src/corelibs/U2Test/src/xmltest/
H A DXMLTestUtils.cpp48 CHECK_OP(stateInfo, ); in checkAttribute()
63 CHECK_OP(stateInfo, 0); in getInt()
73 CHECK_OP(stateInfo, 0); in getInt64()
83 CHECK_OP(stateInfo, 0); in getDouble()
172 CHECK_OP(stateInfo, ); in init()
180 CHECK_OP(stateInfo, ); in init()
198 stateInfo.setError(err); in init()
222 stateInfo.setError(t->getError()); in report()
233 stateInfo.setError(QString("Test failed: %1").arg(msg)); in report()
250 GUrlUtils::removeDir(url, stateInfo); in report()
[all …]
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/
H A DModifySequenceObjectTask.cpp79 seqObj->replaceRegion(regionToReplace, sequence2Insert, stateInfo); in report()
80 CHECK_OP(stateInfo, ReportResult_Finished); in report()
82 …annotationForReport = FixAnnotationsUtils::fixAnnotations(&stateInfo, seqObj, regionToReplace, seq… in report()
161 newDoc = df->createNewLoadedDocument(iof, url, stateInfo, curDoc->getGHintsMap()); in cloneSequenceAndAnnotations()
162 CHECK_OP(stateInfo, ); in cloneSequenceAndAnnotations()
165 stateInfo.setError(tr("Failed to add sequence object to document!")), ); in cloneSequenceAndAnnotations()
167 …opySequence(oldSeqObj->getSequenceRef(), newDoc->getDbiRef(), U2ObjectDbi::ROOT_FOLDER, stateInfo); in cloneSequenceAndAnnotations()
168 CHECK_OP(stateInfo, ); in cloneSequenceAndAnnotations()
194 GObject *cl = aObj->clone(newDoc->getDbiRef(), stateInfo); in cloneSequenceAndAnnotations()
195 CHECK_OP(stateInfo, ); in cloneSequenceAndAnnotations()
H A DScriptTask.cpp36 result = runScript(&engine, conf.inputParametersMap, scriptText, stateInfo); in run()
42 result = runScript(&engine, conf.inputParametersMap, scriptText, stateInfo); in report()
47 …<QString, QScriptValue> &inputParametersMap, const QString &scriptText, TaskStateInfo &stateInfo) { in runScript() argument
61 …stateInfo.setError(tr("Script syntax check failed! Line: %1, error: %2").arg(syntaxResult.errorLin… in runScript()
69 stateInfo.setError(tr("Exception during script execution! Line: %1, error: %2") in runScript()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cufflinks/
H A DCuffdiffSupportTask.cpp83 stateInfo.setError(tr("At least 2 sets of assemblies are required for Cuffdiff")), ); in prepare()
86 CHECK_OP(stateInfo, ); in prepare()
91 stateInfo); in prepare()
92 CHECK_OP(stateInfo, ); in prepare()
95 CHECK_OP(stateInfo, ); in prepare()
101 …workingDir = ExternalToolSupportUtils::createTmpDir(CufflinksSupport::CUFFDIFF_TMP_DIR, stateInfo); in setupWorkingDir()
103 …ToolSupportUtils::createTmpDir(settings.workingDir, CufflinksSupport::CUFFDIFF_TMP_DIR, stateInfo); in setupWorkingDir()
129 CHECK_OP(stateInfo, nullptr); in createTranscriptTask()
246 transcriptDoc.reset(format->createNewLoadedDocument(iof, transcriptUrl, stateInfo)); in createTranscriptDoc()
247 CHECK_OP(stateInfo, ); in createTranscriptDoc()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/hmmer/
H A DConvertAlignment2StockholmTask.cpp62 CHECK_OP(stateInfo, result); in onSubTaskFinished()
66 CHECK_OP(stateInfo, result); in onSubTaskFinished()
69 CHECK_OP(stateInfo, result); in onSubTaskFinished()
98 ExternalToolSupportUtils::removeTmpDir(workingDir, stateInfo); in prepareResultUrl()
99 CHECK_OP(stateInfo, ); in prepareResultUrl()
113 …stateInfo.addWarning(tr("File contains several multiple alignments. Only the first one is saved to… in prepareSaveTask()
/dports/security/cryptlib/cryptlib-3.4.3/keyset/
H A Ddbx_rd.c305 OUT_OPT int *stateInfo, in getItemData() argument
331 assert( ( stateInfo == NULL ) || \ in getItemData()
352 stateInfo != NULL ) ); in getItemData()
364 if( stateInfo != NULL ) in getItemData()
365 *stateInfo = CRYPT_ERROR; in getItemData()
388 if( stateInfo != NULL ) in getItemData()
541 if( stateInfo != NULL ) in getItemData()
542 *stateInfo = *iCertificate; in getItemData()
549 OUT int *stateInfo, in getFirstItemFunction() argument
596 INOUT int *stateInfo, in getNextItemFunction() argument
[all …]
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/
H A DCreateSequenceFromTextAndOpenViewTask.cpp68 CHECK_OP(stateInfo, res); in onSubTaskFinished()
79 CHECK_OP(stateInfo, res); in onSubTaskFinished()
92 …quenceFromRawDataTask(AppContext::getDbiRegistry()->getSessionTmpDbiRef(stateInfo), U2ObjectDbi::R… in prepareImportSequenceTasks()
93 CHECK_OP(stateInfo, QList<Task *>()); in prepareImportSequenceTasks()
101 return format->createNewLoadedDocument(ioAdapterFactory, saveToPath, stateInfo); in createEmptyDocument()
106 CHECK_OP(stateInfo, ); in addDocument()
/dports/devel/splint/splint-3.1.2/src/Headers/
H A DstateValue.h21 /*@only@*/ stateInfo info;
24 extern /*@notnull@*/ stateValue stateValue_create (int p_value, /*@only@*/ stateInfo p_info) /*@*/ ;
25 extern /*@notnull@*/ stateValue stateValue_createImplicit (int p_value, /*@only@*/ stateInfo p_info…
47 extern /*@observer@*/ stateInfo stateValue_getInfo (stateValue p_s) /*@*/ ;
49 extern void stateValue_updateValue (/*@sef@*/ stateValue p_s, int p_value, /*@only@*/ stateInfo p_i…
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/psipred/src/
H A DPsipredAlgTask.cpp55 …stateInfo.setError(SecStructPredictTask::tr("psipred: sequence is too long, max seq size is 10000"… in run()
60 … stateInfo.setError(SecStructPredictTask::tr("psipred: sequence is too short, min seq size is 5")); in run()
68 stateInfo.setError(QString("psipred error: %1").arg(msg)); in run()
83 stateInfo.setError(QString("psipred error: %1").arg(msg)); in run()
102 stateInfo.setError(QString("psipred error: %1").arg(msg)); in run()
/dports/biology/ugene/ugene-40.1/src/plugins/dotplot/src/
H A DDotPlotTasks.cpp59 stateInfo.setError(tr("Wrong dotplot format")); in run()
92 if (stateInfo.cancelFlag) { in saveDotPlot()
97 stateInfo.progress = (100 * i) / listSizes; in saveDotPlot()
108 if (stateInfo.cancelFlag) { in saveDotPlot()
113 stateInfo.progress = (100 * i) / listSizes; in saveDotPlot()
169 while (!stream.atEnd() && !stateInfo.cancelFlag) { in loadDotPlot()
191 stateInfo.progress = (100 * streamPos) / fileSize; in loadDotPlot()
274 doc = format->createNewUnloadedDocument(iof, url, stateInfo, hints); in loadFile()
275 CHECK_OP(stateInfo, nullptr); in loadFile()
316 stateInfo.progress = 0; in run()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/trimmomatic/
H A DTrimmomaticTask.cpp78 GUrlUtils::prepareFileLocation(settings.logUrl, stateInfo); in getArguments()
84 GUrlUtils::prepareFileLocation(settings.seOutputUrl, stateInfo); in getArguments()
92 GUrlUtils::prepareFileLocation(settings.pairedOutputUrl1, stateInfo); in getArguments()
93 GUrlUtils::prepareFileLocation(settings.pairedOutputUrl2, stateInfo); in getArguments()
94 GUrlUtils::prepareFileLocation(settings.unpairedOutputUrl1, stateInfo); in getArguments()
95 GUrlUtils::prepareFileLocation(settings.unpairedOutputUrl2, stateInfo); in getArguments()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/u_calibrate/
H A DHMMCalibrateTask.cpp22 UHMMCalibrate::calibrate(hmm, settings, stateInfo); in run()
24 stateInfo.setError(e.error); in run()
34 wpool.progress = &stateInfo.progress; in HMMCalibrateParallelTask()
66 stateInfo.setError("fit failed; num sequences may be set too small?\n"); in run()
73 stateInfo.setError(e.error); in run()
101 stateInfo.setError(e.error); in run()
137 UHMMCalibrate::calibrateParallel(pt->getWorkPool(), stateInfo); in run()
139 stateInfo.setError(e.error); in run()
172 stateInfo.setError(tr("HMMReadTask didn't generate \"hmm\" object, stop.")); in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/ceas/
H A DCEASSupportTask.cpp122 workingDir = appSettings->createCurrentProcessTemporarySubDir(stateInfo, BASE_DIR_NAME); in prepare()
123 CHECK_OP(stateInfo, ); in prepare()
126 CHECK_OP(stateInfo, ); in prepare()
144 CHECK_EXT(nullptr != bedFormat, stateInfo.setError("NULL bed format"), ); in createBedDoc()
147 IOAdapterUtils::get(BaseIOAdapters::LOCAL_FILE), bedUrl, stateInfo); in createBedDoc()
148 CHECK_OP(stateInfo, ); in createBedDoc()
204 if (!GUrlUtils::renameFileWithNameRoll(dst, stateInfo, excludeFileNames, &taskLog)) { in copyFile()
223 CHECK_OP(stateInfo, ); in run()
230 CHECK_OP(stateInfo, ); in run()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/sitecon/src/
H A DDIPropertiesTests.cpp54 … stateInfo.setError(QString("Wrong conversion to the integer for %1").arg(EXPECTED_AVE_ATTR)); in init()
65 … stateInfo.setError(QString("Wrong conversion to the integer for %1").arg(EXPECTED_SDEV_ATTR)); in init()
77 …stateInfo.setError(QString("Expected and Actual 'SDev' values are different: %1 %2").arg(expSdev /… in report()
81 …stateInfo.setError(QString("Expected and Actual 'Average' values are different: %1 %2").arg(expAve… in report()
86 stateInfo.setError(QString("Given key '%1' don't present in property map").arg(key)); in report()
/dports/biology/ugene/ugene-40.1/src/plugins/CoreTests/src/
H A DDocumentModelTests.cpp116 stateInfo.setError(QString("doc_format_is_not_specified")); in init()
165 stateInfo.setError(loadTask->getError()); in report()
171 stateInfo.setError("Log is incorrect!"); in report()
275 stateInfo.setError(QString("file read without errors")); in report()
394 stateInfo.setError(importTask->getError()); in report()
400 stateInfo.setError("Log is incorrect!"); in report()
462 stateInfo.setError(QString("file read without errors")); in report()
909 CHECK_OP(stateInfo, ); in compareMixed()
919 CHECK_OP(stateInfo, ); in compareMixed()
961 CHECK_OP(stateInfo, ReportResult_Finished); in report()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalo/
H A DClustalOSupportTask.cpp123 stateInfo.setError(tr("Can not create folder for temporary files.")); in prepare()
136 stateInfo.setError(subTask->getError()); in onSubTaskFinished()
181 stateInfo.setError(tr("Output file %1 not found").arg(outputUrl)); in onSubTaskFinished()
183 … stateInfo.setError(tr("Output file %3 not found. May be %1 tool path '%2' not valid?") in onSubTaskFinished()
266 dstMsaObject->updateGapModel(stateInfo, rowsGapModel); in onSubTaskFinished()
267 SAFE_POINT_OP(stateInfo, res); in onSubTaskFinished()
271 dstMsaObject->updateRowsOrder(stateInfo, resultRowIds); in onSubTaskFinished()
272 SAFE_POINT_OP(stateInfo, res); in onSubTaskFinished()
300 stateInfo.setError(tr("Can not remove folder for temporary files.")); in report()
344 …CHECK_EXT(!formats.isEmpty(), stateInfo.setError(tr("Unrecognized input alignment file format")), … in prepare()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/conservation_plot/
H A DConservationPlotTask.cpp83 workingDir = appSettings->createCurrentProcessTemporarySubDir(stateInfo, BASE_DIR_NAME); in prepare()
84 CHECK_OP(stateInfo, ); in prepare()
96 CHECK_OP(stateInfo, ); in prepare()
113 CHECK_EXT(nullptr != bedFormat, stateInfo.setError("NULL bed format"), doc); in createDoc()
116 IOAdapterUtils::get(BaseIOAdapters::LOCAL_FILE), docUrl, stateInfo); in createDoc()
117 CHECK_OP(stateInfo, doc); in createDoc()
169 if (!GUrlUtils::renameFileWithNameRoll(dst, stateInfo, excludeFileNames, &taskLog)) { in copyFile()
187 CHECK_OP(stateInfo, ); in run()
/dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/external_script/base_scheme_interface/
H A DCInterfaceManualTests.cpp67 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
71 CHECK_NO_ERROR(stateInfo); in IMPLEMENT_TEST()
106 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
110 CHECK_NO_ERROR(stateInfo); in IMPLEMENT_TEST()
134 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
138 CHECK_NO_ERROR(stateInfo); in IMPLEMENT_TEST()
207 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
211 CHECK_NO_ERROR(stateInfo); in IMPLEMENT_TEST()
246 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
320 U2OpStatusImpl stateInfo; in IMPLEMENT_TEST() local
[all …]
H A DSchemeSimilarityUtils.h40 U2OpStatus &stateInfo);
46 U2OpStatus &stateInfo);
48 U2OpStatus &stateInfo);
49 static QString readFileContent(QFile &file, U2OpStatus &stateInfo);
/dports/biology/ugene/ugene-40.1/src/plugins/pcr/src/import/
H A DImportPrimerFromObjectTask.cpp54 primer.sequence = sequenceObject->getWholeSequenceData(stateInfo); in run()
55 CHECK_OP(stateInfo, ); in run()
63 PrimerLibrary *library = PrimerLibrary::getInstance(stateInfo); in run()
64 CHECK_OP(stateInfo, ); in run()
65 library->addRawPrimer(primer, stateInfo); in run()
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/
H A DFASTQWorkersLibrary.cpp174 FASTQIterator iter(settings.inputUrl, stateInfo); in runStep()
175 if (stateInfo.hasError()) { in runStep()
179 if (stateInfo.isCoR()) { in runStep()
354 CHECK(!stateInfo.hasError(), DNAQualityType_Sanger); in detectQualityType()
389 CHECK_OP(stateInfo, ); in runStep()
391 FASTQIterator iter(settings.inputUrl, stateInfo); in runStep()
392 CHECK_OP(stateInfo, ); in runStep()
395 CHECK_OP(stateInfo, ); in runStep()
569 FASTQIterator iter(url, stateInfo); in runStep()
570 if (stateInfo.hasError()) { in runStep()
[all …]
H A DAminoTranslationWorker.cpp60 SAFE_POINT_EXT(dbiRef.isValid(), stateInfo.setError("Invalid DBI reference supplied!"), ); in TranslateSequence2AminoTask()
112 importer.addBlock(translatedSeq.constData(), translatedSeq.size(), stateInfo); in run()
116 CHECK_OP(stateInfo, ); in run()
122 importer.addBlock(translatedSeq.constData(), translatedSeq.size(), stateInfo); in run()
123 U2Sequence u2Seq = importer.finalizeSequence(stateInfo); in run()
125 CHECK_OP(stateInfo, ); in run()
145 importer.addBlock(translatedSeq.constData(), translatedSeq.size(), stateInfo); in run()
150 CHECK_OP(stateInfo, ); in run()
161 importer.addBlock(translatedSeq.constData(), translatedSeq.size(), stateInfo); in run()
162 U2Sequence u2Seq = importer.finalizeSequence(stateInfo); in run()
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/u_build/
H A DHMMBuildDialogController.cpp211 stateInfo.setError(tr("Error reading alignment file")); in HMMBuildToFileTask()
248 stateInfo.setError(tr("Incorrect input file")); in onSubTaskFinished()
253 stateInfo.setError(tr("Alignment object not found!")); in onSubTaskFinished()
274 if (stateInfo.hasError()) { in _run()
280 stateInfo.setError(buildTask->getStateInfo().getError()); in _run()
289 HMMIO::writeHMM2(iof, outFile, stateInfo, hmm); in _run()
345 stateInfo.setError(tr("Multiple alignment is empty")); in _run()
362 stateInfo.setError(tr("Error creating MSA structure")); in _run()
378 hmm = UHMMBuild::build(msa, atype, settings, stateInfo); in _run()
380 stateInfo.setError(e.error); in _run()
[all …]
/dports/biology/ugene/ugene-40.1/src/ugeneui/src/project_support/
H A DProjectTasksGui.cpp70 stateInfo.setError(tr("No active project found")); in prepare()
100 stateInfo.setError(tr("Not a readable file: %1").arg(url)); in prepare()
270 ProjectFileUtils::saveProjectFile(stateInfo, proj, url); in _run()
274 if (!stateInfo.hasError() && url == proj->getProjectURL()) { in report()
301 if (!stateInfo.hasError()) { in report()
359 QDir dDir(GUrlUtils::prepareDirLocation(destinationDir, stateInfo)); in report()
360 CHECK_OP(stateInfo, ReportResult_Finished); in report()
429 stateInfo.setError(loadTask->getError()); in report()
489 stateInfo.setError(exportTask->getError()); in report()
557 stateInfo.setError(tr("No project loaded")); in prepare()
[all …]
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_phyltree/
H A DTreeViewerTasks.cpp74 if (stateInfo.hasError() || (phyObject.isNull() && documentsToLoad.isEmpty())) { in open()
90 stateInfo.setError(tr("Phylogenetic tree object not found")); in open()
126 doc = createDocumentAndAddToProject(ref.docUrl, AppContext::getProject(), stateInfo); in OpenSavedTreeViewerTask()
127 CHECK_OP_EXT(stateInfo, stateIsIllegal = true, ); in OpenSavedTreeViewerTask()
135 if (stateInfo.hasError()) { in open()
143 stateInfo.setError(L10N::errorDocumentNotFound(ref.docUrl)); in open()
154 stateInfo.setError(tr("Phylogeny tree object not found: %1").arg(ref.objName)); in open()
215 CHECK(!stateInfo.isCoR(), ); in prepare()
221 CHECK(!stateInfo.isCoR(), Task::ReportResult_Finished); in report()
249 CHECK_OP(stateInfo, ); in prepare()
[all …]

12345678910>>...20