Searched refs:uColCount (Results 51 – 60 of 60) sorted by relevance
123
36 const unsigned uColCount = GetColCount(); in GetGCGCheckSum() local37 for (unsigned uColIndex = 0; uColIndex < uColCount; ++uColIndex) in GetGCGCheckSum()
142 unsigned uColCount = uSymbols + uIndels; in EstringOp() local145 a.SetSize(1, uColCount); in EstringOp()167 assert(uColIndex == uColCount); in EstringOp()168 return uColCount; in EstringOp()
150 const unsigned uColCount = msaA.GetColCount(); in FromMSAPair() local151 if (uColCount != msaB.GetColCount()) in FromMSAPair()158 for (unsigned uColIndex = 0; uColIndex < uColCount; ++uColIndex) in FromMSAPair()
23 SCORE ObjScoreDP_Profs(const ProfPos *PA, const ProfPos *PB, unsigned uColCount,
253 const unsigned uColCount = msa.GetColCount(); in ObjScoreSPDimer() local254 for (unsigned uColIndex = 0; uColIndex < uColCount; ++uColIndex) in ObjScoreSPDimer()
146 unsigned uColCount = uSymbols + uIndels; in EstringOp() local149 a.SetSize(1, uColCount); in EstringOp()171 assert(uColIndex == uColCount); in EstringOp()172 return uColCount; in EstringOp()
266 const unsigned uColCount = msa.GetColCount(); in ObjScoreSPDimer() local267 for (unsigned uColIndex = 0; uColIndex < uColCount; ++uColIndex) in ObjScoreSPDimer()
53 void ExpandCache(unsigned uSeqCount, unsigned uColCount);