1 /* @include embmol ************************************************************ 2 ** 3 ** Routines for molecular weight matching. 4 ** 5 ** @author Copyright (c) 1999 Alan Bleasby 6 ** @version $Revision: 1.13 $ 7 ** @modified $Date: 2011/10/18 14:24:24 $ by $Author: rice $ 8 ** @@ 9 ** 10 ** This library is free software; you can redistribute it and/or 11 ** modify it under the terms of the GNU Lesser General Public 12 ** License as published by the Free Software Foundation; either 13 ** version 2.1 of the License, or (at your option) any later version. 14 ** 15 ** This library is distributed in the hope that it will be useful, 16 ** but WITHOUT ANY WARRANTY; without even the implied warranty of 17 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 18 ** Lesser General Public License for more details. 19 ** 20 ** You should have received a copy of the GNU Lesser General Public 21 ** License along with this library; if not, write to the Free Software 22 ** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 23 ** MA 02110-1301, USA. 24 ** 25 ******************************************************************************/ 26 27 #ifndef EMBMOL_H 28 #define EMBMOL_H 29 30 31 /* ========================================================================= */ 32 /* ============================= include files ============================= */ 33 /* ========================================================================= */ 34 35 #include "ajdefine.h" 36 #include "ajstr.h" 37 #include "embprop.h" 38 39 AJ_BEGIN_DECLS 40 41 42 43 44 /* ========================================================================= */ 45 /* =============================== constants =============================== */ 46 /* ========================================================================= */ 47 48 49 50 51 #define EMBMOLPARDISP (double)1000000.0 52 53 54 55 56 /* ========================================================================= */ 57 /* ============================== public data ============================== */ 58 /* ========================================================================= */ 59 60 61 62 63 /* @data EmbPMolFrag ********************************************************** 64 ** 65 ** Nucleus sequence molecular fragment object. 66 ** 67 ** @attr begin [ajint] Start 68 ** @attr end [ajint] End 69 ** @attr mwt [double] Molecular weight 70 ** @@ 71 ******************************************************************************/ 72 73 typedef struct EmbSMolFrag 74 { 75 ajint begin; 76 ajint end; 77 double mwt; 78 } EmbOMolFrag; 79 #define EmbPMolFrag EmbOMolFrag* 80 81 82 83 84 /* ========================================================================= */ 85 /* =========================== public functions ============================ */ 86 /* ========================================================================= */ 87 88 89 90 /* 91 ** Prototype definitions 92 */ 93 94 ajint embMolGetFrags(const AjPStr thys, ajint rno, EmbPPropMolwt const *mwdata, 95 AjBool mono, AjPList *l); 96 97 /* 98 ** End of prototype definitions 99 */ 100 101 AJ_END_DECLS 102 103 #endif /* !EMBMOL_H */ 104