1<multi-test>
2    <plugin_primer_3>
3        <plugin_primer_3_in
4
5                PRIMER_SEQUENCE_ID="mispriming"
6                PRIMER_PICK_INTERNAL_OLIGO="1"
7                PRIMER_SELF_ANY="11"
8                PRIMER_MAX_POLY_X="100"
9                PRIMER_INTERNAL_OLIGO_MAX_POLY_X="100"
10                PRIMER_SELF_END="12"
11                PRIMER_NUM_RETURN="1"
12                SEQUENCE="TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG"
13                TARGET="21,122"
14                PRIMER_LEFT_INPUT="CCTACAGCTGTGGGAAAATG"
15                PRIMER_INTERNAL_OLIGO_INPUT="gcgtacgatccatgctagc"
16                PRIMER_INTERNAL_OLIGO_MIN_TM="60"
17                PRIMER_MAX_TM="100"
18                PRIMER_MAX_GC="100"
19                PRIMER_MISPRIMING_LIBRARY="not_for_production.lib"
20                PRIMER_MAX_MISPRIMING="8"
21                PRIMER_EXPLAIN_FLAG="1"
22                PRIMER_PICK_ANYWAY="1"
23
24        />
25        <plugin_primer_3_out
26                PRIMER_PAIRS_NUMBER="1"
27                PRIMER_PAIR_PENALTY="4.0864"
28                PRIMER_LEFT_PENALTY="1.771733"
29                PRIMER_RIGHT_PENALTY="2.314641"
30                PRIMER_INTERNAL_OLIGO_PENALTY="1.580164"
31                PRIMER_LEFT_SEQUENCE="CCTACAGCTGTGGGAAAATG"
32                PRIMER_RIGHT_SEQUENCE="CAGTGTGTACATGGCGGC"
33                PRIMER_INTERNAL_OLIGO_SEQUENCE="gcgtacgatccatgctagc"
34                PRIMER_LEFT="1,20"
35                PRIMER_RIGHT="160,18"
36                PRIMER_INTERNAL_OLIGO="23,19"
37                PRIMER_LEFT_TM="58.228"
38                PRIMER_RIGHT_TM="59.685"
39                PRIMER_INTERNAL_OLIGO_TM="59.420"
40                PRIMER_LEFT_GC_PERCENT="50.000"
41                PRIMER_RIGHT_GC_PERCENT="61.111"
42                PRIMER_INTERNAL_OLIGO_GC_PERCENT="57.895"
43                PRIMER_LEFT_SELF_ANY="10.00"
44                PRIMER_RIGHT_SELF_ANY="6.00"
45                PRIMER_INTERNAL_OLIGO_SELF_ANY="6.00"
46                PRIMER_LEFT_SELF_END="0.00"
47                PRIMER_RIGHT_SELF_END="3.00"
48                PRIMER_INTERNAL_OLIGO_SELF_END="6.00"
49                PRIMER_LEFT_MISPRIMING_SCORE="9.00, L1 Human L1 interspersed repetitive sequence - full length copy"
50                PRIMER_RIGHT_MISPRIMING_SCORE="8.00, L1 Human L1 interspersed repetitive sequence - full length copy"
51                PRIMER_PAIR_MISPRIMING_SCORE="17.00, L1 Human L1 interspersed repetitive sequence - full length copy"
52                PRIMER_LEFT_END_STABILITY="7.2000"
53                PRIMER_RIGHT_END_STABILITY="12.9000"
54                PRIMER_PAIR_COMPL_ANY="4.00"
55                PRIMER_PAIR_COMPL_END="1.00"
56                PRIMER_PRODUCT_SIZE="160"
57        />
58    </plugin_primer_3>
59</multi-test>
60