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Searched refs:ALP_set_of_parameters (Results 1 – 6 of 6) sorted by relevance

/dports/biology/diamond/diamond-2.0.13/src/lib/alp/
H A Dsls_pvalues.hpp51 struct ALP_set_of_parameters struct
53 ALP_set_of_parameters() in ALP_set_of_parameters() argument
162 const ALP_set_of_parameters &gumbel_params_);
165 ALP_set_of_parameters &gumbel_params_);
180 const ALP_set_of_parameters &par_,
195 static void compute_tmp_values(ALP_set_of_parameters &par_);
198 const ALP_set_of_parameters &par_,
213 const ALP_set_of_parameters &par_,
231 ALP_set_of_parameters &par_);
238 const ALP_set_of_parameters &ParametersSet,
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H A Dsls_pvalues.cpp50 const ALP_set_of_parameters &par_, in get_appr_tail_prob_with_cov()
298 ALP_set_of_parameters &par_) in compute_intercepts()
342 void pvalues::compute_tmp_values(ALP_set_of_parameters &par_) in compute_tmp_values()
367 const ALP_set_of_parameters &par_, in get_appr_tail_prob_with_cov_without_errors()
548 const ALP_set_of_parameters &par_, in get_P_error_using_splitting_method()
586 ALP_set_of_parameters par_tmp; in get_P_error_using_splitting_method()
780 const ALP_set_of_parameters &ParametersSet, in calculate_P_values()
823 const ALP_set_of_parameters &ParametersSet, in calculate_P_values()
940 const ALP_set_of_parameters &gumbel_params_) in operator <<()
1047 ALP_set_of_parameters &gumbel_params_) in operator >>()
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H A Dsls_alignment_evaluer.hpp171 const ALP_set_of_parameters &parameters() const { return d_params; } in parameters()
203 ALP_set_of_parameters d_params;//set of Gumbel parameters
/dports/biology/mmseqs2/MMseqs2-13-45111/lib/alp/
H A Dsls_pvalues.hpp51 struct ALP_set_of_parameters struct
53 ALP_set_of_parameters() in ALP_set_of_parameters() argument
162 const ALP_set_of_parameters &gumbel_params_);
165 ALP_set_of_parameters &gumbel_params_);
180 const ALP_set_of_parameters &par_,
195 static void compute_tmp_values(ALP_set_of_parameters &par_);
198 const ALP_set_of_parameters &par_,
213 const ALP_set_of_parameters &par_,
231 ALP_set_of_parameters &par_);
238 const ALP_set_of_parameters &ParametersSet,
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H A Dsls_pvalues.cpp50 const ALP_set_of_parameters &par_, in get_appr_tail_prob_with_cov()
298 ALP_set_of_parameters &par_) in compute_intercepts()
342 void pvalues::compute_tmp_values(ALP_set_of_parameters &par_) in compute_tmp_values()
367 const ALP_set_of_parameters &par_, in get_appr_tail_prob_with_cov_without_errors()
548 const ALP_set_of_parameters &par_, in get_P_error_using_splitting_method()
586 ALP_set_of_parameters par_tmp; in get_P_error_using_splitting_method()
780 const ALP_set_of_parameters &ParametersSet, in calculate_P_values()
823 const ALP_set_of_parameters &ParametersSet, in calculate_P_values()
940 const ALP_set_of_parameters &gumbel_params_) in operator <<()
1047 ALP_set_of_parameters &gumbel_params_) in operator >>()
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H A Dsls_alignment_evaluer.hpp176 const ALP_set_of_parameters &parameters() const { return d_params; } in parameters()
208 ALP_set_of_parameters d_params;//set of Gumbel parameters