Searched refs:AVG_QUAL_HIST_FILE (Results 1 – 2 of 2) sorted by relevance
791 …AVG_QUAL_HIST_FILE, QUAL_HIST_FILE, BQUAL_HIST_FILE, BQUAL_HIST_OVERALL_FILE, QUAL_COUNT_HIST_FILE, in testFiles()801 if(AVG_QUAL_HIST_FILE!=null){rs.writeAverageQualityToFile(AVG_QUAL_HIST_FILE, paired);} in writeAll()1625 AVG_QUAL_HIST_FILE=null; in clear()1666 public static String AVG_QUAL_HIST_FILE=null; field in ReadStats
797 …UAL_HIST_FILE==null && ReadStats.QUAL_HIST_FILE!=null && ReadStats.AVG_QUAL_HIST_FILE!=null && Rea… in qhistsNull()815 …ReadStats.AVG_QUAL_HIST_FILE=(b==null || b.equalsIgnoreCase("null") || b.equalsIgnoreCase("none"))… in parseHist()817 …TATS){System.err.println("Set average quality histogram output to "+ReadStats.AVG_QUAL_HIST_FILE);} in parseHist()820 …UAL_HIST_FILE!=null || ReadStats.QUAL_HIST_FILE!=null || ReadStats.AVG_QUAL_HIST_FILE!=null || Rea… in parseHist()