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Searched refs:AltLabelQV (Results 1 – 10 of 10) sorted by relevance

/dports/biology/pbbam/pbbam-0.18.0/tests/src/cram/
H A Dpbmerge_pacbio_ordering.t.in18 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
28 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
110 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
111 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
197 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
198 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
284 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
285 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
375 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
376 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
H A Dpbmerge_mixed_ordering.t.in17 …ames=ip;PulseWidth:Frames=pw;PkMid=pm;PkMean=pa;LabelQV=pq;AltLabel=pt;AltLabelQV=pv;PulseMergeQV=…
/dports/biology/pbbam/pbbam-0.18.0/tests/src/
H A Dtest_WhitelistedZmwReadStitcher.cpp70 EXPECT_EQ(b1.AltLabelQV(), b2.AltLabelQV()); in Compare()
H A Dtest_ZmwReadStitcher.cpp71 EXPECT_EQ(b1.AltLabelQV(), b2.AltLabelQV()); in Compare()
H A Dtest_BamRecord.cpp574 … { return b.AltLabelQV(orientation, aligned, exciseSoftClips, pulseBehavior).Fastq(); } in CheckPulseQualityTags()
/dports/biology/pbbam/pbbam-0.18.0/src/
H A DVirtualZmwBamRecord.cpp118 if (b.HasAltLabelQV()) MoveAppend(std::move(b.AltLabelQV()), alternativeLabelQv); in StitchSources()
218 if (!alternativeLabelQv.empty()) this->AltLabelQV(alternativeLabelQv); in StitchSources()
H A DBamRecord.cpp409 QualityValues BamRecord::AltLabelQV(Orientation orientation, bool aligned, bool exciseSoftClips, in AltLabelQV() function in PacBio::BAM::BamRecord
416 BamRecord& BamRecord::AltLabelQV(const QualityValues& altLabelQVs) in AltLabelQV() function in PacBio::BAM::BamRecord
606 internal::ClipPulse(AltLabelQV(Orientation::NATIVE), p2bCache, clipFrom, clipLength) in ClipTags()
/dports/biology/pbbam/pbbam-0.18.0/include/pbbam/internal/
H A DBamRecordView.inl25 { return record_.AltLabelQV(orientation_, aligned_, exciseSoftClips_, pulseBehavior_); }
/dports/biology/pbbam/pbbam-0.18.0/include/pbbam/
H A DBamRecord.h451 QualityValues AltLabelQV(Orientation orientation = Orientation::NATIVE, bool aligned = false,
892 BamRecord& AltLabelQV(const QualityValues& altLabelQVs);
/dports/biology/pbbam/pbbam-0.18.0/
H A DCHANGELOG.md447 - AltLabelQV()