Searched refs:BASE_HIST_FILE (Results 1 – 3 of 3) sorted by relevance
792 …MATCH_HIST_FILE, INSERT_HIST_FILE, BASE_HIST_FILE, QUAL_ACCURACY_FILE, INDEL_HIST_FILE, ERROR_HIST… in testFiles()808 if(BASE_HIST_FILE!=null){rs.writeBaseContentToFile(BASE_HIST_FILE, paired);} in writeAll()1633 BASE_HIST_FILE=null; in clear()1674 public static String BASE_HIST_FILE=null; field in ReadStats
831 …ReadStats.BASE_HIST_FILE=(b==null || b.equalsIgnoreCase("null") || b.equalsIgnoreCase("none")) ? n… in parseHist()832 ReadStats.COLLECT_BASE_STATS=(ReadStats.BASE_HIST_FILE!=null); in parseHist()833 …_BASE_STATS){System.err.println("Set base content histogram output to "+ReadStats.BASE_HIST_FILE);} in parseHist()
194 ReadStats.BASE_HIST_FILE=bhistFile; in TestFormat()