Searched refs:BQSR_BASE_DELETION_QUALITIES (Results 1 – 2 of 2) sorted by relevance
47 …public static final String BQSR_BASE_DELETION_QUALITIES = "BD"; // base qualities … field in ReadUtils806 …read.setAttribute(BQSR_BASE_DELETION_QUALITIES, quals == null ? null : SAMUtils.phredToFastq(quals… in setDeletionBaseQualities()813 …ead.hasAttribute(BQSR_BASE_INSERTION_QUALITIES) || read.hasAttribute(BQSR_BASE_DELETION_QUALITIES); in hasBaseIndelQualities()827 return SAMUtils.fastqToPhred( read.getAttributeAsString(BQSR_BASE_DELETION_QUALITIES)); in getExistingBaseDeletionQualities()
149 read.clearAttribute(ReadUtils.BQSR_BASE_DELETION_QUALITIES); in apply()