Searched refs:BandedChainAlignmentScout (Results 1 – 6 of 6) sorted by relevance
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_scout.h | 57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef 101 class DPScout_<TDPCell, BandedChainAlignmentScout> 138 typedef BandedChainAlignmentScout Type; 161 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout) 227 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 240 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 276 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &, 290 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 305 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout) 312 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout) [all …]
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H A D | banded_chain_alignment_impl.h | 257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization() 271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_scout.h | 57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef 101 class DPScout_<TDPCell, BandedChainAlignmentScout> 138 typedef BandedChainAlignmentScout Type; 161 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout) 227 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 240 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 276 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &, 290 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 305 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout) 312 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout) [all …]
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H A D | banded_chain_alignment_impl.h | 257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization() 271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | banded_chain_alignment_scout.h | 57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef 101 class DPScout_<TDPCell, BandedChainAlignmentScout> 137 typedef BandedChainAlignmentScout Type; 160 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout) 226 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 239 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 275 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &, 289 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout, 304 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout) 311 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout) [all …]
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H A D | banded_chain_alignment_impl.h | 241 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization() 255 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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