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Searched refs:BandedChainAlignmentScout (Results 1 – 6 of 6) sorted by relevance

/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_scout.h57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef
101 class DPScout_<TDPCell, BandedChainAlignmentScout>
138 typedef BandedChainAlignmentScout Type;
161 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout)
227 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
240 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
276 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &,
290 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
305 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout)
312 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout)
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H A Dbanded_chain_alignment_impl.h257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_scout.h57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef
101 class DPScout_<TDPCell, BandedChainAlignmentScout>
138 typedef BandedChainAlignmentScout Type;
161 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout)
227 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
240 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
276 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &,
290 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
305 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout)
312 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout)
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H A Dbanded_chain_alignment_impl.h257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_scout.h57 typedef Tag<BandedChainAlignmentScout_> BandedChainAlignmentScout; typedef
101 class DPScout_<TDPCell, BandedChainAlignmentScout>
137 typedef BandedChainAlignmentScout Type;
160 _reinitScout(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout)
226 _setScoutState(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
239 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
275 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> &,
289 _scoutBestScore(DPScout_<TDPCell, BandedChainAlignmentScout> & dpScout,
304 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> & scout)
311 maxScore(DPScout_<TDPCell, BandedChainAlignmentScout> const & scout)
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H A Dbanded_chain_alignment_impl.h241 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
255 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()