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Searched refs:BlastMaskLocNew (Results 1 – 17 of 17) sorted by relevance

/dports/biology/diamond/diamond-2.0.13/src/lib/blast/
H A Dblast_filter.h123 BlastMaskLoc* BlastMaskLocNew(uint32_t total);
H A Dblast_filter.cpp202 BlastMaskLoc* BlastMaskLocNew(int32_t total) in BlastMaskLocNew() function
221 retval = BlastMaskLocNew(mask_loc->total_size); in BlastMaskLocDup()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/
H A Dblast_filter.h142 BlastMaskLoc* BlastMaskLocNew(Int4 total);
/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_filter.h142 BlastMaskLoc* BlastMaskLocNew(Int4 total);
H A Dblast_filter.c759 BlastMaskLoc* BlastMaskLocNew(Int4 total) in BlastMaskLocNew() function
778 retval = BlastMaskLocNew(mask_loc->total_size); in BlastMaskLocDup()
1270 *filter_maskloc = BlastMaskLocNew(kNumContexts); in BlastSetUp_GetFilteringLocations()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/core/
H A Dblast_filter.h142 BlastMaskLoc* BlastMaskLocNew(Int4 total);
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Ddust_filter.c142 *filter_maskloc = BlastMaskLocNew(query_info->last_context+1); in s_GetFilteringLocations()
H A Drepeats_filter.c112 mask = BlastMaskLocNew(num_seqs*kNumContexts); in s_FillMaskLocFromBlastHSPResults()
H A Dblast_seq.c155 retval = BlastMaskLocNew(kNumSeqs*kNumContexts); in BlastMaskLocFromSeqLoc()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_filter.c760 BlastMaskLoc* BlastMaskLocNew(Int4 total) in BlastMaskLocNew() function
779 retval = BlastMaskLocNew(mask_loc->total_size); in BlastMaskLocDup()
1278 *filter_maskloc = BlastMaskLocNew(kNumContexts); in BlastSetUp_GetFilteringLocations()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_filter.c760 BlastMaskLoc* BlastMaskLocNew(Int4 total) in BlastMaskLocNew() function
779 retval = BlastMaskLocNew(mask_loc->total_size); in BlastMaskLocDup()
1278 *filter_maskloc = BlastMaskLocNew(kNumContexts); in BlastSetUp_GetFilteringLocations()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dblastfilter_unit_test.cpp105 CBlastMaskLoc mask(BlastMaskLocNew(num_seqs*kNumContexts)); in x_TestGetSeqLocInfoVector()
1370 BlastMaskLoc* filter_maskloc = BlastMaskLocNew(1); in BOOST_AUTO_TEST_CASE()
1422 BlastMaskLocNew(query_info->last_context+1); in BOOST_AUTO_TEST_CASE()
1603 CBlastMaskLoc mask_loc(BlastMaskLocNew(kNumContexts)); in BOOST_AUTO_TEST_CASE()
1914 CBlastMaskLoc mask(BlastMaskLocNew(1)); in BOOST_AUTO_TEST_CASE()
1928 (BlastMaskLocNew(kNumSeqs*GetNumberOfContexts(kProgram))); in BOOST_AUTO_TEST_CASE()
H A Dscoreblk_unit_test.cpp264 BlastMaskLoc* filter_maskloc = BlastMaskLocNew(1); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dblastfilter_unit_test.cpp105 CBlastMaskLoc mask(BlastMaskLocNew(num_seqs*kNumContexts)); in x_TestGetSeqLocInfoVector()
1370 BlastMaskLoc* filter_maskloc = BlastMaskLocNew(1); in BOOST_AUTO_TEST_CASE()
1422 BlastMaskLocNew(query_info->last_context+1); in BOOST_AUTO_TEST_CASE()
1603 CBlastMaskLoc mask_loc(BlastMaskLocNew(kNumContexts)); in BOOST_AUTO_TEST_CASE()
1914 CBlastMaskLoc mask(BlastMaskLocNew(1)); in BOOST_AUTO_TEST_CASE()
1928 (BlastMaskLocNew(kNumSeqs*GetNumberOfContexts(kProgram))); in BOOST_AUTO_TEST_CASE()
H A Dscoreblk_unit_test.cpp264 BlastMaskLoc* filter_maskloc = BlastMaskLocNew(1); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dblast_setup_cxx.cpp516 CBlastMaskLoc mask(BlastMaskLocNew(qinfo->num_queries*kNumContexts)); in SetupQueries_OMF()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dblast_setup_cxx.cpp516 CBlastMaskLoc mask(BlastMaskLocNew(qinfo->num_queries*kNumContexts)); in SetupQueries_OMF()