Searched refs:CALC_DISTANCE (Results 1 – 9 of 9) sorted by relevance
54 final static int CALC_DISTANCE = 0; field in Calculations129 for (int type = CALC_DISTANCE; type <= CALC_TORSION; type++) { in setConstraints()209 return calc(CALC_DISTANCE, gradients, true); in energyBond()274 case CALC_DISTANCE: in constraintEnergy()303 case CALC_DISTANCE: in constraintEnergy()330 case CALC_DISTANCE: in constrainQuadratic()358 case CALC_DISTANCE: in getConstraintList()363 case CALC_DISTANCE: in getConstraintList()446 case CALC_DISTANCE: in getDebugHeader2()506 case CALC_DISTANCE: in getDebugLineC()[all …]
106 calc = calculations[CALC_DISTANCE] = new Lst<Object[]>(); in setupCalculations()189 case CALC_DISTANCE: in compute()
85 calc = calculations[CALC_DISTANCE] = new Lst<Object[]>(); in setupCalculations()173 case CALC_DISTANCE: in compute()
43 calcs.appendLogData(calcs.getDebugLine(Calculations.CALC_DISTANCE, this)); in compute()
42 calcs.appendLogData(calcs.getDebugLine(Calculations.CALC_DISTANCE, this)); in compute()
1169 …if ((parallel_tot > 1) && (calculation_type & (CALC_DISTANCE | CALC_GENOME | CALC_RELATIONSHIP)) &… in plink()6117 calculation_type |= CALC_DISTANCE; in main()10739 …} else if ((cluster.ppc == 0.0) && ((calculation_type & (CALC_DISTANCE | CALC_PLINK1_DISTANCE_MATR… in main()10757 if (calculation_type & (CALC_DISTANCE | CALC_PLINK1_DISTANCE_MATRIX)) { in main()12813 if ((cluster.ppc != 0.0) && (!read_genome_fname) && (calculation_type & (CALC_DISTANCE))) { in main()12817 …if ((calculation_type & (CALC_CLUSTER | CALC_NEIGHBOR)) && (((calculation_type & CALC_DISTANCE) &&… in main()12848 if (distance_wts_fname && (!(calculation_type & (CALC_DISTANCE | CALC_RELATIONSHIP)))) { in main()12852 …if ((parallel_tot > 1) && (!(calculation_type & (CALC_LD | CALC_DISTANCE | CALC_GENOME | CALC_RELA… in main()
399 #define CALC_DISTANCE 4LLU macro
7576 …uint32_t missing_wt_needed = ((calculation_type & CALC_DISTANCE) || ((!read_dists_fname) && (calcu… in calc_distance()8162 if (calculation_type & (CALC_DISTANCE | CALC_IBS_TEST)) { in calc_distance()8179 if (calculation_type & CALC_DISTANCE) { in calc_distance()
5324 …return ((calculation_type & CALC_DISTANCE) || ((calculation_type & (CALC_PLINK1_DISTANCE_MATRIX | … in distance_req()